| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1293974 | 32 (0.570) | 3 (0.060) | 3/84 | NT | 11.2% | intergenic (+32/+112) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS |
| ? | AP009048 | = 1293984 | 21 (0.450) | intergenic (+42/+102) | galU/hns | glucose‑1‑phosphate uridylyltransferase/global DNA‑binding transcriptional dual regulator H‑NS | |||||
TGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGG > AP009048/1293915‑1294053 | tGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGa < 1:3183362‑M2/71‑2 (MQ=255) gaagaaGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGa < 1:2168715‑M2/70‑2 (MQ=255) aagaGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccg > 1:3610218‑M2/1‑65 (MQ=255) aagaGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccg > 1:4814695‑M2/1‑65 (MQ=255) agagATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccgt > 1:2505300‑M2/1‑64 (MQ=255) gagaTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccgtt < 1:1813208‑M2/71‑9 (MQ=255) agaTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccgttt > 1:4359967‑M2/1‑62 (MQ=255) agaTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccgtt > 1:3797366‑M2/1‑62 (MQ=255) gaTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGa < 1:3933013‑M2/62‑2 (MQ=255) gaTGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttt < 1:3043593/71‑1 (MQ=255) ggCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTta < 1:18132/71‑1 (MQ=255) gCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTtat < 1:2781268/71‑1 (MQ=255) tAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgc < 1:2320906‑M2/56‑5 (MQ=255) aagaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGct < 1:3069900/70‑1 (MQ=255) aagaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGct < 1:647096/70‑1 (MQ=255) agaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGa > 1:3690694‑M2/1‑50 (MQ=255) gaagTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttt < 1:2213105/61‑1 (MQ=255) agTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGacgccg < 1:1523405‑M2/53‑7 (MQ=255) agTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTtata > 1:92571/1‑63 (MQ=255) agTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGcttattc > 1:387891/1‑71 (MQ=255) aCATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGcttattc < 1:2930204/67‑1 (MQ=255) cATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGcttattcttat > 1:4408490/1‑70 (MQ=255) aTCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGac > 1:2999246‑M2/1‑41 (MQ=255) aTCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGac > 1:1683132‑M2/1‑41 (MQ=255) aTCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGac > 1:1037839‑M2/1‑41 (MQ=255) aTCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGctt > 1:4176842/1‑61 (MQ=255) gTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAAtt < 1:1247096/71‑1 (MQ=255) aTCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTg > 1:3476923/1‑70 (MQ=255) gtgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGtttttt < 1:4687894/43‑1 (MQ=255) gtgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTa < 1:3796373/71‑1 (MQ=255) gtgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTa < 1:2758194/71‑1 (MQ=255) tgtTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTaa < 1:1976869/71‑1 (MQ=255) tATCCACGAAACGGCGTTGAGCAATCGacgccgttt > 1:3588467‑M2/1‑27 (MQ=255) tCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTtat > 1:502526/1‑40 (MQ=255) tCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCg < 1:525782/70‑1 (MQ=255) cACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGa > 1:3669144/1‑70 (MQ=255) cGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACaa > 1:802494/1‑71 (MQ=255) ggCGTTGAGCAATCGacgccgtttcgtggataacaccgatacggatgttac > 1:3832904‑M2/1‑15 (MQ=255) ggCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTaa < 1:41990/56‑1 (MQ=255) ggCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATaaaa > 1:2309640/1‑70 (MQ=255) cGTTGAGCAATCGacgccgtttcgtggataacaccgctacggatgttactt < 1:4877622‑M2/51‑39 (MQ=255) gTTGAGCAATCGacgccgtttcgtggataacaccga > 1:4577524‑M2/1‑12 (MQ=255) tGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAAc > 1:2353078/1‑53 (MQ=255) tGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATaa < 1:1870995/63‑1 (MQ=255) aaTCGACGCCGTTTTTTTATAGCTTATTCTTATTaaa < 1:1199297/37‑1 (MQ=255) aTCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCt > 1:4036333/1‑71 (MQ=255) tCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATaaaa < 1:554986/58‑1 (MQ=255) tCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATaaaa < 1:3894228/58‑1 (MQ=255) tCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTg < 1:3621732/71‑1 (MQ=255) gACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCTCTgg < 1:544802/70‑1 (MQ=255) gACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTgg < 1:4672571/70‑1 (MQ=255) | TGAAGAAGAGATGGGCATTAAGAAGTAACATCCGTATCGGTGTTATCCACGAAACGGCGTTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGG > AP009048/1293915‑1294053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |