| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1818339 | 67 (1.190) | 5 (0.100) | 3/92 | NT | 6.9% | coding (511/750 nt) | chbG | conserved hypothetical protein |
| ? | AP009048 | = 1818354 | 75 (1.480) | coding (496/750 nt) | chbG | conserved hypothetical protein | |||||
TCCAGCACTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTGCTCT > AP009048/1818287‑1818421 | tCCAGCACTTGCAGGAACAGCGACTCACTGATCTCTTCACCTTAGAATGCACTGCTGAATCCCTGGGTagt > 1:1800840‑M2/1‑68 (MQ=255)tCCAGCACTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTagt > 1:1413192‑M2/1‑68 (MQ=255) aGCACTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTag < 1:1416556‑M2/67‑3 (MQ=255) cTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAgg < 1:2295264/71‑1 (MQ=255) cTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAgg > 1:2324799/1‑71 (MQ=255) gCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGtt > 1:79512/1‑70 (MQ=255) gCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGtt > 1:1383005/1‑70 (MQ=255) cAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGa < 1:58734/71‑1 (MQ=255) ggAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTa > 1:1498934‑M2/1‑55 (MQ=255) ggAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGa < 1:4233092/69‑1 (MQ=255) gAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCg > 1:3270444/1‑71 (MQ=255) gAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCg > 1:116238/1‑71 (MQ=255) gAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCg > 1:3238349/1‑71 (MQ=255) aCAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGt > 1:1404148/1‑52 (MQ=255) cAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCa < 1:2742388/71‑1 (MQ=255) cAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCa < 1:269575/71‑1 (MQ=255) cAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCa < 1:3996088/71‑1 (MQ=255) aGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCa > 1:1365502/1‑70 (MQ=255) gACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAAt > 1:1000021/1‑70 (MQ=255) gACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATc < 1:925043/71‑1 (MQ=255) aCTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCa < 1:3615063/71‑1 (MQ=255) aCTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCa < 1:3621062/71‑1 (MQ=255) cTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCaa < 1:5133218/71‑1 (MQ=255) tCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGt > 1:650329/1‑55 (MQ=255) cACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAAc > 1:580718/1‑71 (MQ=255) aCTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACg > 1:5169769/1‑71 (MQ=255) aCTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACg > 1:1685901/1‑71 (MQ=255) tGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAg < 1:1946180/49‑1 (MQ=255) tGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCaaa > 1:3379244/1‑67 (MQ=255) tGATCTCTTCACCGTAGAATGCACTGCTGAATCACTGGGTAGTGCGCAGGTTGACCGGCAAAt < 1:2903693/63‑1 (MQ=255) aTCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGcc < 1:1994956/69‑1 (MQ=255) aTCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCa < 1:1189688/70‑1 (MQ=255) aTCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCAt > 1:3893362/1‑71 (MQ=255) tctcTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGt > 1:1146313/1‑48 (MQ=255) tatctTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATc > 1:4004387/3‑71 (MQ=255) ttCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGAc > 1:3601378/1‑48 (MQ=255) ttCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCAt < 1:4861972/66‑1 (MQ=255) ttCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCt < 1:1644831/68‑1 (MQ=255) ttCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCt < 1:3148004/68‑1 (MQ=255) ttCACCGTAGAATGCACTGCTGAATCCCTGGGTAGT‑CGCAGGTTGACCGGCAAATCAAACGCCATCt < 1:543644/67‑1 (MQ=255) tCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGAc > 1:370474/1‑70 (MQ=255) cACCGTAGAATGCACTGCTGAATCCCTGGGTAGTgcgc > 1:3373983/1‑38 (MQ=255) cACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGt > 1:1860805/1‑42 (MQ=255) cACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCaaa > 1:3607199/1‑53 (MQ=255) cACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACg < 1:2838511/70‑1 (MQ=255) aCCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGAt > 1:947984/1‑71 (MQ=255) ccGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATc > 1:2394999/1‑71 (MQ=255) cGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCaa < 1:3150899/49‑1 (MQ=255) cGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCaa < 1:3093036/49‑1 (MQ=255) cGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATc > 1:807863/1‑70 (MQ=255) tAGAATGCACTGCTGAATCCCTGGGTAGTGGGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccgc < 1:4476234/71‑1 (MQ=255) tAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccgc < 1:2998518/71‑1 (MQ=255) gAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccgccc > 1:2937709/1‑71 (MQ=255) aTGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccgcccgc < 1:679184/71‑1 (MQ=255) tGCACTGCTGAATCCCTGGGTagtgcattctacggtgaagagatcagtgagtcgctgttc > 1:3811392‑M2/1‑21 (MQ=255) tGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgca < 1:651186/71‑1 (MQ=255) cACTGCTGAATCCCTGGGTagtgcattctacggtgaagagatcagtgagtcgctgttcctgcaagtgctg > 1:1801005‑M2/1‑19 (MQ=255) cACTGCTGAATCCCTGGGTagtgcattctacggtgaagagatcagtgagtcgctgttcctgcaagtgctg > 1:5032487‑M2/1‑19 (MQ=255) cACTGCTGAATCCCTGGGTagtgcattctacggtgaagagatcagtgagtcgctgttcct < 1:3112368‑M2/60‑42 (MQ=255) cACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaac > 1:1221882/1‑71 (MQ=255) cACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaa < 1:3284801/70‑1 (MQ=255) aCTGCTGAATCCCTGGGTagtgcattctacggtgaagagatcagtgagtcgctgttcctgcaagtgctg > 1:2413909‑M2/1‑18 (MQ=255) ctgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaacgc < 1:3869721/71‑1 (MQ=255) tgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCa < 1:109500/41‑1 (MQ=255) tgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGcc < 1:2655724/47‑1 (MQ=255) tgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGcc < 1:4692797/47‑1 (MQ=255) tgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATc > 1:2958055/1‑58 (MQ=255) tgctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaacgc < 1:68804/70‑1 (MQ=255) gctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccgccc > 1:2994890/1‑62 (MQ=255) ctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATccg > 1:3584476/1‑58 (MQ=255) ctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaacgcaa < 1:3552410/70‑1 (MQ=255) ctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaacgcaa < 1:5034791/70‑1 (MQ=255) ctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaacgca < 1:2473045/69‑1 (MQ=255) ctgAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAAt > 1:1373319/1‑71 (MQ=255) gAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGAc > 1:212014/1‑50 (MQ=255) gAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGAc > 1:3993122/1‑50 (MQ=255) aaTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATg < 1:304025/69‑1 (MQ=255) aaTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGcc > 1:1947166/1‑71 (MQ=255) aaTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGcc > 1:1358976/1‑71 (MQ=255) aaTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGcc > 1:4288533/1‑71 (MQ=255) aTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgcaa > 1:5018768/1‑61 (MQ=255) aTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGcc < 1:3593322/70‑1 (MQ=255) aTCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGcc > 1:4045003/1‑70 (MQ=255) cccTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTg > 1:2682444/1‑71 (MQ=255) ccTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGa > 1:2030716/1‑44 (MQ=255) ccTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCcgca > 1:4816532/1‑57 (MQ=255) ccTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTg < 1:419163/70‑1 (MQ=255) ccTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTGc > 1:2347136/1‑71 (MQ=255) cTGGGTAGTTCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTGct > 1:5161289/1‑71 (MQ=255) ggTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTg < 1:1069587/39‑1 (MQ=255) ggTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTGctct < 1:4692712/70‑1 (MQ=255) | TCCAGCACTTGCAGGAACAGCGACTCACTGATCTCTTCACCGTAGAATGCACTGCTGAATCCCTGGGTAGTGCGCAGGTTGACCGGCAAATCAAACGCCATCTGACGATCCGCCCGCAACGCAATGCCCTGCTCT > AP009048/1818287‑1818421 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |