| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2109295 = | 40 (0.710) | 4 (0.080) | 3/90 | NT | 9.4% | coding (69/1167 nt) | wbbH | O‑antigen polymerase |
| ? | AP009048 | 2109315 = | 42 (0.850) | coding (49/1167 nt) | wbbH | O‑antigen polymerase | |||||
CAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTT > AP009048/2109247‑2109384 | cAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAAc < 1:2418971/71‑1 (MQ=255) aTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:3617274/1‑68 (MQ=255) aTAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAg < 1:2720310/71‑1 (MQ=255) aaGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGa > 1:540732/1‑70 (MQ=255) aGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATa < 1:2199917/71‑1 (MQ=255) gACCAGTGCGAAGATGATATTAACGCATAAGGCTGGATAAAATATATCCTTCTTAAGATATaa < 1:250592/63‑1 (MQ=255) aCCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATaaa < 1:4413216/71‑1 (MQ=255) gTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCt > 1:5149212/1‑71 (MQ=255) attagtgtctttctcattacagcatttatctgttTATATCCTTCTTAAGATATaa < 1:2436248‑M1/21‑1 (MQ=255) aaGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt < 1:2929565/71‑1 (MQ=255) agtgtctttctcattacagcatttatctgtttatatccttcttaagatataAACAGATAAATGCTGTAAt < 1:4172186‑M2/19‑1 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:4878007/1‑53 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTaa > 1:4958494/1‑69 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:4394183/1‑70 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:3841251/1‑70 (MQ=255) aGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAAt > 1:1561209/1‑70 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgaga < 1:2973464/71‑1 (MQ=255) tgatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgag > 1:2412919/1‑70 (MQ=255) gatATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAAc > 1:2012209/1‑50 (MQ=255) tatTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATgag > 1:3557520/1‑67 (MQ=255) tatTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAg < 1:2566342/71‑1 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:4582828/1‑45 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa < 1:3855587/70‑1 (MQ=255) ttAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa > 1:4339163/1‑70 (MQ=255) aCGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACt < 1:3004491/71‑1 (MQ=255) attacagcatttatctgttTATATCTTAAGAAGGATATAAACAGATAAATGCTGTAATGAGAAAGACACt < 1:4172186‑M1/51‑1 (MQ=255) gCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGa > 1:5151712/1‑44 (MQ=255) aTACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGa < 1:2490106/63‑1 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATaaa > 1:3647772/1‑35 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4514452/70‑1 (MQ=255) cGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:361447/70‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:1892866/71‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:3568055/71‑1 (MQ=255) ggCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACaa < 1:2555154/71‑1 (MQ=255) cTGGATAAAATATATCCTTCTTAAGATATAAACAGAt < 1:310234/37‑1 (MQ=255) tGGATAAAATATATCCTTCTTAAGATATAAACAGATa < 1:799697/37‑1 (MQ=255) ggATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4912149/65‑1 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4393505/62‑1 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAaga > 1:3830383/1‑66 (MQ=255) tAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAaga > 1:1550565/1‑66 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:2911979/59‑1 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTAc < 1:4860218/59‑1 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt < 1:1030301/71‑1 (MQ=255) aaTATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt > 1:4740725/1‑71 (MQ=255) ttatatcttaagaaggatataAACAGATAAATGCTGTAATGAGAAAGACACTAAt < 1:2436248‑M2/34‑1 (MQ=255) atatatCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGaaa > 1:1708156/1‑46 (MQ=255) atatatCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCAt > 1:3954474/1‑70 (MQ=255) TATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagatag < 1:306850‑M1/64‑1 (MQ=255) TATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTa > 1:4653668‑M1/1‑71 (MQ=255) ATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTaa < 1:2506331‑M1/71‑1 (MQ=255) TATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagatag > 1:4267201‑M1/1‑62 (MQ=255) TATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAAt > 1:3664604‑M1/1‑71 (MQ=255) atcttaagaagtatataAACAGATAAATGCTGTAAt < 1:11928‑M2/19‑1 (MQ=255) atcttaagaaggatataAACAGATAAATGCTGTAAt < 1:1868489‑M2/19‑1 (MQ=255) cttcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagatagat < 1:4500324/60‑1 (MQ=255) cttcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCg < 1:2272087/70‑1 (MQ=255) cttcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCg < 1:291429/70‑1 (MQ=255) ttcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGAAACTAATTACAAGATAGATCAtt > 1:1484256/1‑63 (MQ=255) tcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagat > 1:2439572/1‑54 (MQ=255) tcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCa > 1:3919575/1‑60 (MQ=255) tcttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTAc > 1:281515/1‑71 (MQ=255) cttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACt < 1:2409068/42‑1 (MQ=255) cttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTa < 1:1757058/69‑1 (MQ=255) cttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACt > 1:1733036/1‑71 (MQ=255) cttAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACt > 1:2216033/1‑71 (MQ=255) aaGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAAtt < 1:2901256/43‑1 (MQ=255) aaGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACtga > 1:3198769/1‑68 (MQ=255) atataAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagatag < 1:671615‑M2/44‑1 (MQ=255) ataAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAagata > 1:4421315‑M2/4‑46 (MQ=255) taAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATtata < 1:1213527‑M2/67‑1 (MQ=255) taAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATAtt > 1:1051049‑M2/3‑71 (MQ=255) aAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAaga > 1:4971064‑M2/2‑42 (MQ=255) aaCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATAttt < 1:4615808/70‑1 (MQ=255) aaCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATAttt < 1:4035925/70‑1 (MQ=255) aaCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATAttt < 1:1262759/70‑1 (MQ=255) aaCAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATAttt < 1:729645/70‑1 (MQ=255) | CAATAAGACCAGTGCGAAGATGATATTAACGCATACGGCTGGATAAAATATATCCTTCTTAAGATATAAACAGATAAATGCTGTAATGAGAAAGACACTAATTACAAGATAGATCATTAATCCGTACTCATTATATTT > AP009048/2109247‑2109384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |