| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2751068 = | 58 (1.030) | 3 (0.060) | 3/92 | NT | 5.7% | coding (618/1662 nt) | recN | recombination and repair protein |
| ? | AP009048 | 2751097 = | 47 (0.930) | coding (647/1662 nt) | recN | recombination and repair protein | |||||
AATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTG > AP009048/2751028‑2751162 | ttctggctggtggtcagcaattgaccgctgttcgccagacGTTTGAACAAATCGACGAAGAGTACAAACGt > 1:3897762‑M1/41‑71 (MQ=255) aTTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTc < 1:3772642/71‑1 (MQ=255) ttAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCt < 1:2164271/71‑1 (MQ=255) tAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTg > 1:125896/1‑71 (MQ=255) tAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTg > 1:1584873/1‑71 (MQ=255) aaaGAACTTAACGAATTTAATCCTCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTgg < 1:1190036/70‑1 (MQ=255) aaaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTgg > 1:1461335/1‑70 (MQ=255) aaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGc > 1:4354312/1‑70 (MQ=255) aaGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCg < 1:2094549/71‑1 (MQ=255) aGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCg > 1:3636479/1‑70 (MQ=255) ttAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGt < 1:942275/59‑1 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACATCg < 1:1596294/70‑1 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCgg > 1:1476141/1‑71 (MQ=255) aaCGAATTTAATCCGCAGCCCGGAGAGTCTGAACAAATCGACGAAGAGTACAAACGTCTGGc > 1:2598716/1‑62 (MQ=255) aaTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCaa < 1:4442093/71‑1 (MQ=255) aaTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCaa > 1:2082788/1‑71 (MQ=255) aTTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTTGCGAACAGCGGTCAAt > 1:4549591/1‑71 (MQ=255) tAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAg > 1:2185172/1‑60 (MQ=255) aaTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt > 1:110989/1‑71 (MQ=255) aTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt < 1:2813041/70‑1 (MQ=255) aTCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTg < 1:2139688/71‑1 (MQ=255) tCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGa > 1:761598/1‑71 (MQ=255) tCCGCAGCCCGGAGAGTTTGAACAAATAGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGa > 1:3315276/1‑71 (MQ=255) ccGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt < 1:2844446/68‑1 (MQ=255) cGCAGCCCGGAGAGTTTGAACAAATCTACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGac > 1:4070426/1‑70 (MQ=255) cGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGac < 1:904662/70‑1 (MQ=255) cAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2064013/1‑71 (MQ=255) aGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2107236/1‑70 (MQ=255) gCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGaccac > 1:2978475/1‑69 (MQ=255) gCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGAccacca < 1:1895300/71‑1 (MQ=255) cccGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTg < 1:4194746/60‑1 (MQ=255) cGGAGAGTTTGAACAAATCGACGAAGAGTACAAAAGTCTGGCGAACAGCGGTCAATTGCTGACCAccag > 1:4598199/1‑69 (MQ=255) gagaGTATGAACAAATCGACGAAGAGTACAAACGTCTGGCGaa > 1:1584521/1‑43 (MQ=255) agagTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCGccagccag > 1:280632/1‑70 (MQ=255) gagTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAAt > 1:4524542/1‑52 (MQ=255) acgtttgtactcttcgtcgatttgttcaaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa > 1:3897762‑M2/32‑71 (MQ=255) tttgtactcttcgtcgatttgttcaaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATg > 1:1963782‑M2/29‑70 (MQ=255) TTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTc > 1:2877112‑M1/1‑46 (MQ=255) TTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTg > 1:1355061‑M1/1‑51 (MQ=255) TTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa < 1:4119520‑M1/68‑1 (MQ=255) TGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCAt < 1:1553940‑M1/71‑1 (MQ=255) aCAAATCGACGAAGAGTACAAACGTCTGGCGAACa < 1:4810773/35‑1 (MQ=255) aCAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCt < 1:1559918/48‑1 (MQ=255) aCAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTgg < 1:1871508/71‑1 (MQ=255) aCAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTgg > 1:3490315/1‑71 (MQ=255) tcttcgtcgatttgttcaaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCa > 1:4290081‑M2/22‑71 (MQ=255) aTCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGa > 1:4798511/1‑46 (MQ=255) aTCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCa > 1:2593290/1‑63 (MQ=255) tCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCAtt > 1:2134279/1‑70 (MQ=255) cgacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCa < 1:185889/61‑1 (MQ=255) cgacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCa < 1:2036961/61‑1 (MQ=255) cgacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCAt < 1:3130210/68‑1 (MQ=255) cgacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTaa > 1:2226593/1‑71 (MQ=255) gacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTaa < 1:3674998/70‑1 (MQ=255) gacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAAt < 1:287843/71‑1 (MQ=255) gacgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAAt < 1:3512073/71‑1 (MQ=255) acgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATg > 1:1332734/1‑71 (MQ=255) cgaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATgg < 1:2371346/71‑1 (MQ=255) gaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTg < 1:534185/60‑1 (MQ=255) gaAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGc > 1:1163045/1‑71 (MQ=255) gagTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGa > 1:3638183/1‑71 (MQ=255) gagTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGa > 1:4604557/1‑71 (MQ=255) agTACAAACGTCTGGCGAACAGCGGTCAATTGCTGCCCACCAGCCAGAATGCATTGGCATTAATgg > 1:297551/1‑66 (MQ=255) gTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGAc < 1:3922298/70‑1 (MQ=255) tACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACgg < 1:2461450/71‑1 (MQ=255) tACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACgg < 1:3156874/71‑1 (MQ=255) caaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa > 1:4537319‑M2/6‑45 (MQ=255) caaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGt > 1:4782434‑M2/6‑70 (MQ=255) caaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGt > 1:5138904‑M2/6‑70 (MQ=255) caaacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGt < 1:1185929‑M2/65‑1 (MQ=255) aacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATgg > 1:3500892‑M2/4‑60 (MQ=255) aacGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATgg > 1:386662‑M2/4‑60 (MQ=255) acGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTg > 1:3523608‑M2/3‑68 (MQ=255) gTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa > 1:2266231/1‑40 (MQ=255) | AATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTG > AP009048/2751028‑2751162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |