| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2885791 | 66 (1.170) | 8 (0.160) | 7/88 | NT | 12.2% | coding (85/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family |
| ? | AP009048 | = 2885805 | 58 (1.190) | coding (71/2667 nt) | ygcB | conserved hypothetical protein, member of DEAD box family | |||||
TACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCA > AP009048/2885735‑2885874 | tACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGaa > 1:2500705/1‑71 (MQ=255) cGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAta < 1:4361311‑M2/71‑3 (MQ=255) gACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGaa < 1:1276553/68‑1 (MQ=255) aCTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtatc > 1:3820156‑M2/1‑67 (MQ=255) cTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtatca > 1:4188466‑M2/1‑66 (MQ=255) attgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtatcat > 1:4837449‑M2/1‑63 (MQ=255) attgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCAttt < 1:576176/71‑1 (MQ=255) attgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCAttt < 1:3459175/71‑1 (MQ=255) attgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCAttt > 1:3729543/1‑71 (MQ=255) tgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTcc > 1:3353864/1‑71 (MQ=255) tgatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTcc > 1:453338/1‑71 (MQ=255) gatCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCt > 1:428720/1‑71 (MQ=255) atCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCtt < 1:4750789/71‑1 (MQ=255) tCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCttt < 1:4398638/71‑1 (MQ=255) tCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCttt > 1:2845748/1‑71 (MQ=255) accaGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGt > 1:2678119/1‑70 (MQ=255) accaGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTc < 1:3215486/71‑1 (MQ=255) ccaGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTc > 1:2342295/1‑70 (MQ=255) caGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTc > 1:2719337/1‑69 (MQ=255) aGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTc > 1:319466/1‑65 (MQ=255) gCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCtt < 1:3773874/62‑1 (MQ=255) cAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCttt > 1:680558/1‑62 (MQ=255) cAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCt < 1:1807038/71‑1 (MQ=255) tCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCtttt > 1:4295404/1‑71 (MQ=255) tGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtat > 1:1929775‑M2/1‑44 (MQ=255) tGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtat > 1:4708885‑M2/1‑44 (MQ=255) tGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCg > 1:4334482/1‑59 (MQ=255) tGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCttttt > 1:1873327/1‑70 (MQ=255) cAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAg > 1:2447234/1‑71 (MQ=255) cAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAg < 1:3737807/71‑1 (MQ=255) cAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAg < 1:1474362/71‑1 (MQ=255) aaCAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGa > 1:5024536/1‑69 (MQ=255) aCAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAAtatcatt > 1:2218962‑M2/1‑40 (MQ=255) cagcagCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAt > 1:4978832/1‑71 (MQ=255) agcagcAACATCAAGGCATTGATAAATTAACAGATGAATATCATTTCCTTTCGTCa < 1:3056768/56‑1 (MQ=255) agcagcAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCa < 1:4423807/56‑1 (MQ=255) agcagcAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCa < 1:4715967/56‑1 (MQ=255) agcagcAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAtt < 1:2897670/71‑1 (MQ=255) agcagcAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAtt < 1:4503332/71‑1 (MQ=255) agcagcAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAt > 1:1299865/1‑70 (MQ=255) gcagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAttt < 1:2944765/71‑1 (MQ=255) gcagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAttt < 1:2352874/71‑1 (MQ=255) gcagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAttt < 1:5073981/71‑1 (MQ=255) gcagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAttt < 1:5096595/71‑1 (MQ=255) cagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAg < 1:2592899/65‑1 (MQ=255) cagcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAg < 1:2375193/65‑1 (MQ=255) agcaACATCAAGGCAATGATAAATTAACAGATGAAt < 1:1340737‑M2/36‑2 (MQ=255) gcaACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTcc > 1:1148163/1‑71 (MQ=255) caACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTccc < 1:3214688/71‑1 (MQ=255) caACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTcac < 1:2553946/71‑3 (MQ=255) aCATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGAttt > 1:4095999/1‑65 (MQ=255) cATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTccc < 1:2408163/68‑1 (MQ=255) aTCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCttt < 1:4503732/53‑1 (MQ=255) aTCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGt < 1:605383/71‑1 (MQ=255) tCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTg > 1:2117642/1‑55 (MQ=255) tCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTa < 1:255587/71‑1 (MQ=255) cAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTaa > 1:3528421/1‑71 (MQ=255) cAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTaa > 1:385821/1‑71 (MQ=255) aGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTa < 1:5011090/68‑1 (MQ=255) aGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATg < 1:192030/71‑1 (MQ=255) ggCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCt < 1:1858617/46‑1 (MQ=255) ggCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATg > 1:4487450/1‑70 (MQ=255) gCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGc < 1:4595944/71‑1 (MQ=255) aaTGATAAATTAACAGATGAAtatcattgccttgatgttgctgctgttgcagattgctggtggtatca > 1:4410461‑M2/1‑21 (MQ=255) aaTGATAAATTAACAGATGAAtatcattgccttgatgttgctgctgttgcagattgctggtgggatcaa > 1:4962304‑M2/1‑21 (MQ=255) aTGATAAATTAACAGATGAAtatcattgccttgatgttgctgctgttgcagattgctggtgggatcaat < 1:1930109‑M2/69‑50 (MQ=255) aTGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGa < 1:2164120/48‑1 (MQ=255) tGATAAATTAACAGATGAAtatcattgccttgatgttgctgctgttgcagattgctggtgggatcaatc < 1:4447541‑M2/69‑51 (MQ=255) tGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGc < 1:3227016/67‑1 (MQ=255) gATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCtt < 1:501711/41‑1 (MQ=255) aTAAATTAACAGATGAAtatcatttccttgatgttgctgctgttgcagattgctggtgggatcaatc > 1:3070478‑M2/1‑17 (MQ=255) aTAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAg < 1:4727005/58‑1 (MQ=255) aTAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCatatat < 1:940925/71‑1 (MQ=255) aTAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCat > 1:63628/1‑67 (MQ=255) aaaTTAACAGATGAATATCATTTCCTTTCGTCAAGCtt < 1:1243224/38‑1 (MQ=255) aaaTTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCa > 1:4183880/1‑55 (MQ=255) aaaTTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCatatatat > 1:2117010/1‑71 (MQ=255) aTTAACAGATGAAtatcattgccttgatgttgctgctgttgcagattgctggt > 1:4085190‑M2/1‑13 (MQ=255) aTTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTc > 1:3917707/1‑49 (MQ=255) aCAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATTTTTaaa < 1:662676/70‑1 (MQ=255) aGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGa < 1:4910510/38‑1 (MQ=255) aGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAgg < 1:970754/71‑1 (MQ=255) gATGAAtatcatttccttgatgttgctgctgttgcagattgctggtgggatcaatcagtcgtactgcaaaa > 1:499816‑M2/1‑6 (MQ=255) gATGAAtatcatttccttgatgttgctgctgttgcagattgctggtgggatcaatcagtcgtactgcaaaa > 1:1715567‑M2/1‑6 (MQ=255) tGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCa > 1:1818417/1‑53 (MQ=255) gAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTc > 1:3347685/1‑70 (MQ=255) atatCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTc > 1:2149090/1‑37 (MQ=255) atatCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTaa > 1:4594353/1‑45 (MQ=255) atatCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCa > 1:4761716/1‑70 (MQ=255) | TACGACTGATTGATCCCACCAGCAATCTGCAACAGCAGCAACATCAAGGCAATGATAAATTAACAGATGAATATCATTTCCTTTCGTCAAGCTTTTTGAGGATTTTCCCCAGTAATGGCATATATATTTAAAAGGTTCCA > AP009048/2885735‑2885874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |