New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	= 3468051	NA (NA)	3 (0.060)	3/96	NT	NA	intergenic (‑11/+183)	rrlB/gltT	23S ribosomal RNA/tRNA‑Glu
	?	AP009048	= 3468073	NA (NA)					intergenic (‑33/+161)	rrlB/gltT	23S ribosomal RNA/tRNA‑Glu

CACAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATC  >  AP009048/3468042‑3468143                                |                                                                       cacaACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACtctc                                 >  1:1088893/1‑71 (MQ=34) cacaACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACtctc                                 >  1:4765737/1‑71 (MQ=34) cacaACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACtctc                                 >  1:2918789/1‑71 (MQ=34)   caACCCGAAGATGTTTCTTTCGATTCTTCATCGTGTTGCGAAAATTTGAGTGACTCACGAACAACtctc                                 <  1:300516/69‑1 (MQ=11)    aaCCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgtt                              <  1:2521150/71‑1 (MQ=34)      cccGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgttg                             <  1:1535500/70‑1 (MQ=35)      cccGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgttg                             <  1:547160/70‑1 (MQ=35)       ccGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgttgtt                           >  1:4964737/1‑71 (MQ=34)       ccGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgtt                              <  1:1895703/68‑1 (MQ=35)         gAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCa                         <  1:1640276/71‑1 (MQ=34)         gAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCa                         <  1:4182357/71‑1 (MQ=34)         gAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCa                         <  1:2746488/71‑1 (MQ=34)         gAAGATGTATCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACtctc                                 >  1:2055603/1‑63 (MQ=25)           aGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAgt                       >  1:2136437/1‑71 (MQ=34)           aGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAgt                       >  1:200674/1‑71 (MQ=34)           aGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAg                        <  1:1016568/70‑1 (MQ=35)            gATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCa                         >  1:2878403/1‑68 (MQ=35)            gATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAgtg                      >  1:4536729/1‑71 (MQ=34)               gTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgtt                              >  1:2063655/1‑60 (MQ=35)               gTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgtt                              >  1:4294389/1‑60 (MQ=35)                 ttctttcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTc                          <  1:5148109/62‑1 (MQ=35)                 ttctttcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTc                          <  1:4607806/62‑1 (MQ=35)                  tctttcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCaa                >  1:71967/1‑71 (MQ=34)                    tttcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCaa                <  1:3849692/69‑1 (MQ=35)                     ttcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAAttt             >  1:973456/1‑71 (MQ=34)                      tcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCa                         >  1:2009199/1‑58 (MQ=35)                      tcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAgtgt                     >  1:1925936/1‑62 (MQ=35)                      tcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAAtttt            >  1:4169423/1‑71 (MQ=34)                      tcGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAAtt              <  1:2586313/69‑1 (MQ=35)                       cGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAAtttt            <  1:397376/70‑1 (MQ=35)                          ttCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTc                          >  1:353845/1‑53 (MQ=35)                            catcatCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCt       <  1:2965344/70‑1 (MQ=35)                             atcatcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCtt      <  1:165262/70‑1 (MQ=35)                             atcatcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTg     <  1:405955/71‑1 (MQ=34)                             atcatcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTT‑AATTTTCa          <  1:943302/65‑1 (MQ=255)                              tcatcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCgtt                              <  1:289926/45‑1 (MQ=38)                              tcatcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTg     <  1:2295683/70‑1 (MQ=35)                               catcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAg         >  1:2998106/1‑65 (MQ=35)                               catcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAt   >  1:3685802/1‑71 (MQ=34)                               catcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAt   >  1:1242885/1‑71 (MQ=34)                                atcGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATc  <  1:1826496/71‑1 (MQ=34)                                |                                                                       CACAACCCGAAGATGTTTCTTTCGATTCATCATCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATC  >  AP009048/3468042‑3468143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.