| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3634827 = | 82 (1.460) | 4 (0.080) | 4/86 | NT | 6.7% | coding (429/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | AP009048 | 3634851 = | 43 (0.910) | coding (405/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
AACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGAA > AP009048/3634783‑3634921 | aaCTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCAAACAGa < 1:1727227/69‑1 (MQ=255) tGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCcag > 1:997934/1‑71 (MQ=255) tGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCcag > 1:3697185/1‑71 (MQ=255) cTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCcag < 1:416759/69‑1 (MQ=255) cAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:5099352/70‑1 (MQ=255) cAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:5000232/70‑1 (MQ=255) cAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAgcagca < 1:4023257/71‑1 (MQ=255) cAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAgcagca < 1:1809739/71‑1 (MQ=255) aGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGGTTCGAACAGATCCAGCAGCaa < 1:2873940/71‑1 (MQ=255) ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGa > 1:4880540/1‑59 (MQ=255) ggTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAAc > 1:4016089/1‑71 (MQ=255) tCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTc < 1:5098275/71‑1 (MQ=255) gCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:3034012/70‑1 (MQ=255) gCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCg < 1:3608062/70‑1 (MQ=255) cTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAgcagca < 1:2740662/64‑1 (MQ=255) cTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAgcagca < 1:873611/64‑1 (MQ=255) cTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTc < 1:1764921/68‑1 (MQ=255) cTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTa < 1:1630550/71‑1 (MQ=255) taGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCcagca > 1:4113283/1‑58 (MQ=255) aGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGc > 1:1870796/1‑70 (MQ=255) ttttCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:4331748/54‑1 (MQ=255) ttttCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCagcagc < 1:791536/54‑1 (MQ=255) ttttCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTAcc < 1:504422/71‑1 (MQ=255) ttCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGt > 1:3175175/1‑71 (MQ=255) tCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATc > 1:3385931/1‑44 (MQ=255) tCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAg < 1:330859/60‑1 (MQ=255) cAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTc < 1:2814274/70‑1 (MQ=255) cAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTc < 1:2808336/70‑1 (MQ=255) aTTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAc < 1:3017361/71‑1 (MQ=255) tttAATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAc > 1:3012393/1‑70 (MQ=255) ttCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCaa > 1:4838503/1‑48 (MQ=255) tCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCaa > 1:4635778/1‑47 (MQ=255) tCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTa > 1:2353871/1‑60 (MQ=255) tCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCAt > 1:4329471/1‑71 (MQ=255) tCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCAt > 1:4304232/1‑71 (MQ=255) tCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCAt > 1:3346509/1‑71 (MQ=255) aTCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCg < 1:570266/55‑1 (MQ=255) ccAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGt < 1:4772589/45‑1 (MQ=255) ccAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTgg > 1:898923/1‑71 (MQ=255) ccAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTg < 1:2122325/70‑1 (MQ=255) cAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGc < 1:4677796/71‑1 (MQ=255) aaCTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGc > 1:1775815/1‑70 (MQ=255) aaCTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCt < 1:2130526/71‑1 (MQ=255) ctgttcgaaaccaaaatcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTAc > 1:685996‑M2/25‑71 (MQ=255) CTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCaa < 1:1831449‑M1/36‑1 (MQ=255) CTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAc < 1:2621785‑M1/57‑1 (MQ=255) CTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTAc > 1:2381235‑M1/1‑71 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAAc < 1:3811156‑M1/36‑1 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTa < 1:1783015‑M1/41‑1 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTa < 1:1193962‑M1/55‑1 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAcc < 1:2328575‑M1/57‑1 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAcc < 1:2901332‑M1/57‑1 (MQ=255) TGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTAc < 1:1200065‑M1/56‑1 (MQ=255) gttcgaaaccaaaatcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTc < 1:5022403‑M2/30‑1 (MQ=255) GTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTa < 1:3276476‑M1/47‑1 (MQ=255) GTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCg < 1:1802921‑M1/60‑1 (MQ=255) ttcgaaaccaaaatcgaacagATCCAGCAGCAACTCGTAGGc < 1:2163318‑M2/21‑1 (MQ=255) TTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACggg > 1:2125992‑M1/1‑71 (MQ=255) TTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTAACGTCTACCATCGACTGGCTACggg < 1:2082487‑M1/71‑1 (MQ=255) CGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCAt < 1:4844757‑M1/55‑1 (MQ=255) GATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTc > 1:765572‑M1/1‑48 (MQ=255) ATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTa > 1:4423982‑M1/1‑49 (MQ=255) ATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGAc > 1:4450394‑M1/1‑57 (MQ=255) ttttGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTa > 1:1629344/1‑48 (MQ=255) ttttGGTTTCGAACAGATCCAGCAGCAACTAGTAGGCGTTACCGTCTa > 1:4764493/1‑48 (MQ=255) tttGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCa > 1:1546785/1‑71 (MQ=255) accaaaatcgaacagATCCAGCAGCAACTCGTAGGCGTTAcc > 1:1161907‑M2/16‑42 (MQ=255) tGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCAt < 1:1612634/70‑1 (MQ=255) tGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCAt < 1:2722302/70‑1 (MQ=255) gTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTa > 1:3376028/1‑36 (MQ=255) gTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATAc < 1:2702987/70‑1 (MQ=255) gTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACg < 1:2822631/71‑1 (MQ=255) tttCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGa < 1:2293525/71‑1 (MQ=255) tttCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGa < 1:4514469/71‑1 (MQ=255) tttCGAACAGATCCAGCAGCAACTCGTAGACGGTAACGCCt < 1:2246592/41‑1 (MQ=21) ttCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACg > 1:2101017/1‑69 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGa > 1:4089771‑M2/9‑47 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACg > 1:2624775‑M2/9‑56 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:1342703‑M2/9‑71 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:3075430‑M2/9‑71 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:1642767‑M2/9‑71 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:3125835‑M2/9‑71 (MQ=255) tcgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:2615048‑M2/9‑71 (MQ=255) tcgaacagATCCACCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATa > 1:910679‑M2/9‑71 (MQ=255) cgaacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGCCTGGCTACGGGCACGCATACGATa > 1:2730853‑M2/8‑70 (MQ=255) aacagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACa < 1:1612951‑M2/65‑1 (MQ=255) acagATCCAGCAGCAACTCGTAGGCGTTACCGTCTa < 1:1594784‑M2/32‑1 (MQ=255) acagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACa < 1:2070905‑M2/65‑1 (MQ=255) acagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGa > 1:2080531‑M2/5‑71 (MQ=255) cagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTAc > 1:558768‑M2/4‑50 (MQ=255) cagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACggg > 1:3249616‑M2/4‑53 (MQ=255) cagATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGAc < 1:4575913‑M2/68‑1 (MQ=255) cagATCCAGCAGCAACTCGCAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGAc < 1:2756089‑M2/68‑1 (MQ=255) agATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACg < 1:3390729‑M2/69‑1 (MQ=255) gATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGa < 1:2630680‑M2/70‑1 (MQ=255) aTCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGc < 1:3359341/51‑1 (MQ=255) aTCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGaa < 1:618446/71‑1 (MQ=255) | AACTGCTCCAGGTCGCTATAGATATTTTCAATTTCATCTGCCAACTGTTCGATTTTGGTTTCGAACAGATCCAGCAGCAACTCGTAGGCGTTACCGTCTACCATCGACTGGCTACGGGCACGCATACGATACAGACGAA > AP009048/3634783‑3634921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |