| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3873992 = | 86 (1.530) | 4 (0.080) | 4/94 | NT | 5.2% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | AP009048 | 4016461 = | 66 (1.270) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
TACTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > AP009048/4016391‑4016530 | tACTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTa < 1:3291084/71‑1 (MQ=34)tACTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTa < 1:1252961/71‑1 (MQ=34) tctGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGtt > 1:4473657/1‑71 (MQ=34) gCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGttt < 1:1849970/68‑1 (MQ=35) gCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:1165386/70‑1 (MQ=35) cAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:2527822/69‑1 (MQ=35) cAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTa < 1:4688832/71‑1 (MQ=34) gATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:2857626/67‑1 (MQ=35) gATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:4675590/67‑1 (MQ=35) tGAAATCCTTTTCAAGGAATTTCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:2507330/1‑71 (MQ=21) tGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt < 1:1732476/71‑1 (MQ=34) gAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt > 1:1779224/1‑70 (MQ=35) aaaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:85186/70‑1 (MQ=37) aaaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:808351/70‑1 (MQ=37) aaaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATtta < 1:283540/71‑1 (MQ=38) aaaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATtta < 1:3341094/71‑1 (MQ=38) aaTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttat > 1:4934875/1‑71 (MQ=39) aTCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTAAATttat > 1:3174813/1‑70 (MQ=255) tCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt < 1:1799788/66‑1 (MQ=35) tCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatta < 1:134448/71‑1 (MQ=39) ccTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc < 1:109698/58‑1 (MQ=35) cTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtata > 1:3956072/1‑71 (MQ=39) ttCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATtatata > 1:699669/1‑70 (MQ=40) tCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatta < 1:3939121/65‑1 (MQ=40) cAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTa < 1:1575553/47‑1 (MQ=38) cAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTa < 1:2682918/47‑1 (MQ=38) aaGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc < 1:3495759/51‑1 (MQ=35) aaGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAAc > 1:1392535/1‑70 (MQ=40) ggAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc > 1:4142512/1‑49 (MQ=38) aaTTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATAc > 1:2007341/1‑71 (MQ=39) aTTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATAct < 1:2550952/71‑1 (MQ=39) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:643336/53‑1 (MQ=38) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActc > 1:1135761/1‑71 (MQ=39) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActc < 1:1780589/71‑1 (MQ=39) ttGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActc < 1:3146319/71‑1 (MQ=39) tGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:4663091/52‑1 (MQ=38) tGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATActct > 1:1472516/1‑71 (MQ=39) gCGATCATCAAGTAAGCGAAATAATTCATCATAATTTAGTTTCTTACATTTATTATATAAACCATActct < 1:4049097/70‑1 (MQ=255) cGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt < 1:1540389/70‑1 (MQ=37) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatt < 1:1955187/52‑1 (MQ=35) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCttt < 1:664877/70‑1 (MQ=35) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTa < 1:1657715/71‑1 (MQ=34) gATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTa < 1:1728628/71‑1 (MQ=34) tcatcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCtt < 1:1034191/67‑1 (MQ=35) tcatcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACt > 1:2506001/1‑71 (MQ=34) catcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACt > 1:890692/1‑70 (MQ=35) atcaAGTAAGCGAAATAATTCATCATCGTTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACtt < 1:1656238/70‑1 (MQ=255) atcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:3648308/45‑1 (MQ=32) tcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATaa < 1:1619364/53‑1 (MQ=35) tcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATa < 1:3003679/59‑1 (MQ=35) aGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctt < 1:3169613/71‑1 (MQ=34) gTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATttatt < 1:957108/43‑1 (MQ=38) tAAGCGAAATAATTCATCATCATTTAGTTTCTTACAttt < 1:1164783/39‑1 (MQ=33) tAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttc < 1:3612500/71‑1 (MQ=34) tAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttc < 1:4131174/71‑1 (MQ=34) tAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttc < 1:559440/71‑1 (MQ=34) tAAGCAAAATGATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttc > 1:4214754/1‑71 (MQ=255) aaGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttct > 1:4091782/1‑71 (MQ=34) aactaaatgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttctt > 1:4225684‑M2/24‑71 (MQ=255) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAAc > 1:1589267/1‑46 (MQ=38) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:585395/71‑1 (MQ=34) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:2278167/71‑1 (MQ=34) cGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:5090413/71‑1 (MQ=34) taaatgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACtt < 1:3145317‑M2/39‑1 (MQ=255) gAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:3836890/70‑1 (MQ=35) aaatgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCcttt > 1:823489‑M2/20‑64 (MQ=255) aataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg > 1:3305960/1‑71 (MQ=34) aataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg < 1:4266560/71‑1 (MQ=34) aataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg > 1:5024894/1‑71 (MQ=34) atgatgatgaattatttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg > 1:1331472‑M2/18‑71 (MQ=255) ataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTa > 1:4006584/1‑53 (MQ=35) ataatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTgg > 1:1091642/1‑71 (MQ=34) taatTCATCATCATTTAGTTTCTTACATTTATTATATAAACCa < 1:1552977/43‑1 (MQ=38) atcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTg < 1:2895738/50‑1 (MQ=38) atcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctttcttt > 1:2553759/1‑59 (MQ=35) atcatcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGgtatgta < 1:3370620/70‑1 (MQ=35) catcatTTAGTTTCTTACATTTATTATATAAACCATACTCtt < 1:2745473/42‑1 (MQ=38) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttcttttct > 1:5106611/1‑59 (MQ=35) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttctttt > 1:3969849/1‑57 (MQ=35) atcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTAttt < 1:2098441/70‑1 (MQ=35) tcatTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:4343723/71‑1 (MQ=34) catTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctt > 1:1662654/1‑49 (MQ=38) catTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCctt > 1:1488698/1‑49 (MQ=38) catTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa > 1:158793/1‑70 (MQ=35) catTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa > 1:3738492/1‑70 (MQ=35) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGa < 1:3951323‑M2/65‑1 (MQ=255) atttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGAc < 1:768307‑M2/66‑1 (MQ=255) tttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCtttcttttct > 1:1941500‑M2/4‑55 (MQ=255) tttAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTg > 1:2099667‑M2/4‑56 (MQ=255) tttAGTTTCTTACATTTATTATATAAACAATACTCTTTACTTGCCtttcttttct > 1:3802535‑M2/4‑55 (MQ=255) tAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:1561188‑M2/2‑71 (MQ=255) aGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTTACATTg < 1:5054479/70‑1 (MQ=25) aGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg < 1:357011/70‑1 (MQ=35) aGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTg > 1:322923/1‑70 (MQ=35) | TACTCTGGCAGATGAAATCCTTTTCAAGGAATTGCGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTTATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCTGGTATGTATTTGACATTG > AP009048/4016391‑4016530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |