Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AP009048	4213626–4216715	4216715	1–3090	15 [14]	[14] 17	rrlE–[rrfE]	rrlE,[rrfE]

AAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAAG  >  AP009048/4213556‑4213639                                                                      |               aaaCACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCggg               >  1:731915/1‑71 (MQ=34)  aaCACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGt              >  1:3024099/1‑71 (MQ=34)     acTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt           <  1:2071123/71‑1 (MQ=34)     acTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt           >  1:4416367/1‑71 (MQ=34)       tGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgtg          <  1:5137064/70‑1 (MQ=35)        gAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAg        >  1:348592/1‑71 (MQ=34)        gAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAg        >  1:3744992/1‑71 (MQ=34)         aacaacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGa         <  1:3553782/69‑1 (MQ=35)           caacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt     <  1:1096464/71‑1 (MQ=34)           caacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt     <  1:4258824/71‑1 (MQ=34)            aacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTa    <  1:2643931/71‑1 (MQ=34)             acGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTaa   <  1:4482690/71‑1 (MQ=32)              cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCgg                >  1:244082/1‑57 (MQ=31)              cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAAg  <  1:5081703/71‑1 (MQ=31)              cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAAg  >  1:833910/1‑71 (MQ=31)                                                                      |               AAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAAG  >  AP009048/4213556‑4213639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑