| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1439778 | 107 (1.510) | 4 (0.060) | 3/92 | NT | 3.7% | coding (524/1104 nt) | ompC | outer membrane porin protein C |
| ? | Exported | = 1439801 | 107 (1.650) | coding (501/1104 nt) | ompC | outer membrane porin protein C | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1439705‑1439778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAACG < Exported/1439801‑1439734 GTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:1869055/1‑71 TCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTT > 1:2668163/1‑71 GCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC < 1:1851830/71‑1 GCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC < 1:4246998/71‑1 GCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC > 1:2881828/1‑71 CCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC < 1:504376/70‑1 CAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCTGTTCAGTAC > 1:2620169/1‑69 CAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCTGTTCAGTAC > 1:2834940/1‑69 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:258081/1‑47 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:813521/1‑47 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:144980/1‑47 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:3063042/1‑47 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:1913872/1‑47 ACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:2705727/1‑47 ACGACAGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGT > 1:2283259/1‑47 CGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGCTGTTCAGTACCAGGGTAAAAA < 1:4393650/70‑1 CGCCACTAGTAAAGCCTTCACCAGATGGGTTGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTG < 1:455571/71‑1 TTGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAAC > 1:3221906/1‑71 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAACG > 1:685904/1‑71 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAACG > 1:708188/1‑71 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAA < 1:3774694/69‑1 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAA < 1:224948/69‑1 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTAC > 1:2825724/1‑51 TGCTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTAC > 1:3281833/1‑51 GTCGCCGTTTTGACGCAGTGCGTCACGACCGTTGTTAGTTACGCCACTAGTAAAGCCTTCACCAGATGGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1439705‑1439778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcTGTTCAGTACCAGGGTAAAAACGGCAACCCATCTGGTGAAGGCTTTACTAGTGGCGTAACTAACAACG < Exported/1439801‑1439734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |