| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,318,494 | C→A | 8.1% | R29L (CGT→CTT) | cld ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,318,494 | 0 | C | A | 8.1% | 257.0 / 5.3 | 74 | R29L (CGT→CTT) | cld | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Reads supporting (aligned to +/- strand): ref base C (44/24); new base A (3/3); total (47/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.42e-01 | |||||||||||
CGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTAT > Exported/1318424‑1318563 | cGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccac > 1:4304901/1‑71 (MQ=255)cGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccac > 1:1560906/1‑71 (MQ=255) aCTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccactcca > 1:545137/1‑71 (MQ=255) aCTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccacgcca > 1:123203/1‑71 (MQ=255) aCTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccacgcc > 1:1039777/1‑70 (MQ=255) cTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccacgccac < 1:3891506/71‑1 (MQ=255) cTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccacgcc < 1:1088641/69‑1 (MQ=255) cTGCCAAATATCCAATAGCCAGGGCAATACCCACAATGACGGAAATGATGATTGTCATCTTgccacgcca > 1:1171043/1‑70 (MQ=255) gCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:103777/1‑71 (MQ=255) ccAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTgccacgccac > 1:625005/1‑68 (MQ=255) ccAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCcaca < 1:1990516/69‑1 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAAc > 1:581977/1‑69 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTg < 1:1222752/71‑1 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTg < 1:2886021/71‑1 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTg < 1:3513195/71‑1 (MQ=255) aaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGc < 1:2302326/71‑1 (MQ=255) aaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGc < 1:2882755/71‑1 (MQ=255) tatCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCAc > 1:4043087/1‑71 (MQ=255) ccAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAg > 1:1359094/1‑71 (MQ=255) ccAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAg > 1:3869985/1‑71 (MQ=255) ccAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAg > 1:351636/1‑71 (MQ=255) aTAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTa > 1:2987852/1‑70 (MQ=255) aTAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTa > 1:7924/1‑70 (MQ=255) aTAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTa > 1:584109/1‑70 (MQ=255) aGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat < 1:547538/71‑1 (MQ=255) aGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat < 1:1000444/71‑1 (MQ=255) aGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat < 1:3504386/71‑1 (MQ=255) aGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat < 1:2500913/71‑1 (MQ=255) ggCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca < 1:3870646/71‑1 (MQ=255) ggCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca < 1:519675/71‑1 (MQ=255) ggCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca < 1:335507/71‑1 (MQ=255) gCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca > 1:1918423/1‑70 (MQ=255) gCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca > 1:143619/1‑70 (MQ=255) gCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaat < 1:3691540/68‑1 (MQ=255) cAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaa < 1:2599096/71‑1 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:2686598/1‑48 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:3524413/1‑48 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:1106164/1‑48 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:3000824/1‑48 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:1512760/1‑48 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:1156656/1‑48 (MQ=255) aTAGCCACAATGACGGAAATTATGATTGTCATCTTGCCACGCCACAAc < 1:3760073/48‑1 (MQ=255) aTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAAc < 1:329881/48‑1 (MQ=255) aGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAAc > 1:2242182/1‑46 (MQ=255) gCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaatcaat > 1:4090435/1‑71 (MQ=255) gCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaatcaat > 1:2198823/1‑71 (MQ=255) gCCACAATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaa < 1:3999543/57‑1 (MQ=255) gCCACAATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaa < 1:3808384/57‑1 (MQ=255) gCCACAATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaa < 1:183652/57‑1 (MQ=255) cacaATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaatc > 1:4399820/1‑57 (MQ=255) cacaATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaatc > 1:2060300/1‑57 (MQ=255) cacaATGACGGAAATGATGATTGTCATCTTGCCAAGCCACAACTGCACTAGTaaatc > 1:2084680/1‑57 (MQ=255) acaATGACGGAAATGATGATTGTCATCTTgccacgacac < 1:3388688/39‑1 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:2990357/1‑39 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatc > 1:1301430/1‑54 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatc > 1:1125125/1‑54 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatc > 1:3790625/1‑54 (MQ=255) aTGACGGAAATGATGATTGTCATCTTgccacgccac < 1:399146/36‑1 (MQ=255) aTGACGGAAATGATGATTGTCATCTTgccacgccac < 1:3184920/36‑1 (MQ=255) aTGACGGAAATGATGATTGTCATCTTgccacgccac < 1:2190900/36‑1 (MQ=255) aTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTc < 1:3612028/71‑1 (MQ=255) tGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca < 1:647478/57‑1 (MQ=255) tGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTcc > 1:1647223/1‑71 (MQ=255) gACGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:3905818/1‑36 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:3617335/1‑35 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:2622471/1‑35 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACaa > 1:4038462/1‑35 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaa > 1:4016544/1‑57 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTaaatcaatcaaa > 1:1187040/1‑57 (MQ=255) aCGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCg < 1:855359/70‑1 (MQ=255) aCGGAAATGATGATTGTCATCTTCCCACGCCACaa > 1:4091766/1‑35 (MQ=255) aaTGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCAt > 1:3613917/1‑71 (MQ=255) aaTGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCAt > 1:4211749/1‑71 (MQ=255) gatgatTGTCATCTTGCCACGCCACAACTGCACTAGTaaa > 1:2891519/1‑40 (MQ=255) gatgatTGTCATCTTGCCACGCCACAACTGCACTAGTaaa > 1:35966/1‑40 (MQ=255) tgatTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGttt > 1:11463/1‑71 (MQ=255) tgatTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGttt > 1:3607107/1‑71 (MQ=255) tCATCTTGCCACGCCACAACTGCACTAGTaaatcaatca < 1:1036499/39‑1 (MQ=255) cATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGcc > 1:4292424/1‑68 (MQ=255) aTCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGtttt > 1:429321/1‑64 (MQ=255) aTCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGtttt > 1:2475233/1‑64 (MQ=255) aTCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGtttt > 1:1221077/1‑64 (MQ=255) aTCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAg < 1:4134254/70‑1 (MQ=255) tCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTc < 1:2510289/55‑1 (MQ=255) tCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTc < 1:294987/55‑1 (MQ=255) ttGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGaaa > 1:2522999/1‑70 (MQ=255) tGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa > 1:2552135/1‑71 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGaaa > 1:4372316/1‑68 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGaaa < 1:1480291/68‑1 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGaaa > 1:577873/1‑68 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGaaa > 1:605695/1‑68 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACa < 1:994618/70‑1 (MQ=255) acgccacAACTGCACTAGTaaatcaatcaaatcaatc < 1:1430100/37‑1 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACattat < 1:32069/71‑1 (MQ=255) | CGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTAT > Exported/1318424‑1318563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |