| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 129,042 | C→T | 9.4% | L201L (CTG→TTG) | yadH → | predicted transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 129,042 | 0 | C | T | 9.4% | 298.7 / 16.8 | 96 | L201L (CTG→TTG) | yadH | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (44/43); new base T (7/2); total (51/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GTTAACGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAATGATGT > Exported/128972‑129112 | gtTAACGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGc > 1:4731050/1‑71 (MQ=255) ttAACGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGTGCt < 1:5791042/71‑1 (MQ=255) aaCGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGt > 1:5202279/1‑71 (MQ=255) aCGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTc > 1:3928985/1‑71 (MQ=255) aCGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTc > 1:6094576/1‑71 (MQ=255) gCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGc < 1:5208421/71‑1 (MQ=255) cACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCAc > 1:5814470/1‑71 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCg > 1:2807862/1‑63 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCg > 1:5247363/1‑63 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCa > 1:3803002/1‑65 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCa > 1:4480308/1‑65 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCa > 1:2095553/1‑65 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTg < 1:2970392/69‑1 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTg < 1:3754094/69‑1 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTg < 1:833012/69‑1 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGaa > 1:894609/1‑71 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGaa > 1:1567577/1‑71 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGa < 1:1793161/70‑1 (MQ=255) aCGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGa < 1:2339001/70‑1 (MQ=255) tttGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCa < 1:4848940/70‑1 (MQ=255) tttGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGGCGCACCTGAACCCa < 1:4511321/70‑1 (MQ=255) gCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTg < 1:1181270/59‑1 (MQ=255) gggTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTta > 1:6636012/1‑70 (MQ=255) gTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGt > 1:1757328/1‑46 (MQ=255) gTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGt > 1:679031/1‑46 (MQ=255) gTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGt > 1:6744026/1‑46 (MQ=255) tCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATg < 1:5602413/71‑1 (MQ=255) tCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATg < 1:127470/71‑1 (MQ=255) tCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATg < 1:3948811/71‑1 (MQ=255) tCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATg < 1:770664/71‑1 (MQ=255) ttttACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGAt > 1:26811/1‑71 (MQ=255) ttACTCACTGACTTTGTTGCCTCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTta > 1:6491671/1‑63 (MQ=255) ttACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTtat > 1:3385459/1‑64 (MQ=255) aCTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGa > 1:6085462/1‑62 (MQ=255) aCTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTCAACCCAATCGTTTATATGa > 1:6630227/1‑62 (MQ=255) cTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCa > 1:1344770/1‑38 (MQ=255) cTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGa < 1:6797014/43‑1 (MQ=255) cTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGa < 1:5768278/43‑1 (MQ=255) cTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGa < 1:3254321/43‑1 (MQ=255) cTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGttt < 1:5732650/71‑1 (MQ=255) tGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTg < 1:1751150/41‑1 (MQ=255) tGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTc > 1:5183198/1‑71 (MQ=255) tGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTc > 1:879421/1‑71 (MQ=255) tGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTc > 1:4896888/1‑71 (MQ=255) gACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTta > 1:5709878/1‑54 (MQ=255) aCTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCAcc > 1:1071789/1‑37 (MQ=255) aCTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTcc < 1:6175498/70‑1 (MQ=255) aCTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTcc < 1:748305/70‑1 (MQ=255) tgttgCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTAc > 1:1548724/1‑71 (MQ=255) ttgCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAg < 1:2803912/56‑1 (MQ=255) ttgCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAg < 1:1719963/56‑1 (MQ=255) ttgCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAg < 1:4008959/56‑1 (MQ=255) ttgCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACg < 1:6939139/70‑1 (MQ=255) ccgccgTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCtt > 1:2543662/1‑71 (MQ=255) ccgccgTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCtt > 1:2697270/1‑71 (MQ=255) ccgccgTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCt > 1:213349/1‑70 (MQ=255) ccgccgTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCt > 1:2429654/1‑70 (MQ=255) cgccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTAc < 1:726139/65‑1 (MQ=255) cgccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTAc < 1:3902540/65‑1 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:5319514/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:574441/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:4187167/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:3827677/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:276419/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACgg > 1:3670548/1‑65 (MQ=255) ccgTTCTGGCAAGGGTTGTCGCACCTGAACCCAATCGTTTATATGATCAGAGGTTTCCGCTACgg > 1:6907948/1‑65 (MQ=255) ccgTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTcc < 1:2136397/70‑1 (MQ=255) gTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCg > 1:5061634/1‑71 (MQ=255) gTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCg > 1:5833965/1‑71 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:1059911/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:5094409/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:1836522/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:6873718/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:3730535/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGtt < 1:3856693/36‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:6160476/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:1421466/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:6400506/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:1613900/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:6505049/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:2321502/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:3685118/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:1914449/41‑1 (MQ=255) ttCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTatat < 1:1055744/41‑1 (MQ=255) cTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCa > 1:1933046/1‑44 (MQ=255) cTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGc < 1:3815339/55‑1 (MQ=255) cTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTa > 1:194624/1‑71 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTa > 1:3434107/1‑55 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTa > 1:1605753/1‑55 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTa > 1:734039/1‑55 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTa > 1:2308103/1‑55 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTa > 1:6194900/1‑55 (MQ=255) ggCAAGGGCTGTCGCACCTGAACCCAATAGTTTATATGATCAGTGGTTTCCGCTa > 1:6238347/1‑55 (MQ=255) gCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCa < 1:4656843/71‑1 (MQ=255) aGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTcc > 1:6854772/1‑59 (MQ=255) aGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAat > 1:4975729/1‑70 (MQ=255) aGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAat > 1:4991679/1‑70 (MQ=255) cTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAATGATGt < 1:3291206/71‑1 (MQ=255) | GTTAACGCCACTCACGTATTTGGGCGGGGTCTTTTACTCACTGACTTTGTTGCCGCCGTTCTGGCAAGGGCTGTCGCACCTGAACCCAATCGTTTATATGATCAGTGGTTTCCGCTACGGCTTCCTCGGTATCAATGATGT > Exported/128972‑129112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |