| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,802,251 | A→G | 11.0% | S285S (TCT→TCC) | qor ← | quinone oxidoreductase, NADPH‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,802,251 | 0 | A | G | 11.0% | 284.4 / 20.9 | 100 | S285S (TCT→TCC) | qor | quinone oxidoreductase, NADPH‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (43/46); new base G (7/4); total (50/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 116 total aligned reads displayed.
GCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCG > Exported/2802181‑2802319 | gCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCaaa < 1:321239/71‑1 (MQ=255) cgcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAagag < 1:1080642/70‑1 (MQ=255) cgcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAagag < 1:1144917/70‑1 (MQ=255) gcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:2335444/1‑71 (MQ=255) gcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:3499259/1‑71 (MQ=255) gcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:5230581/1‑71 (MQ=255) gcATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:6856654/1‑71 (MQ=255) ccTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGt > 1:6755418/1‑71 (MQ=255) ccTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGt > 1:5795232/1‑71 (MQ=255) cTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGt > 1:4736565/1‑70 (MQ=255) ttCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAagag < 1:4536522/63‑1 (MQ=255) cAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTc < 1:3008806/69‑1 (MQ=255) cAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTc < 1:232862/69‑1 (MQ=255) aGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAt > 1:6610475/1‑70 (MQ=255) cGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGGTGGCAATCAAagag < 1:3358473/58‑1 (MQ=255) gATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAagag < 1:5942318/56‑1 (MQ=255) gATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGtt < 1:3716835/63‑1 (MQ=255) atatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAagag < 1:1719137/55‑1 (MQ=255) atatTTATGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTgg > 1:315/1‑71 (MQ=255) tatTTCTTCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGTACAGTTc < 1:5394886/62‑1 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:3605119/1‑56 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGaa > 1:145465/1‑56 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTc < 1:1314037/62‑1 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTc < 1:1704813/62‑1 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTc < 1:1098097/62‑1 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCa > 1:5519288/1‑63 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCa > 1:5235138/1‑63 (MQ=255) tatTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGc > 1:6947051/1‑71 (MQ=255) atTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAag < 1:2711585/51‑1 (MQ=255) atTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAag < 1:3256151/51‑1 (MQ=255) atTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAag < 1:3090778/51‑1 (MQ=255) atTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAag < 1:5466522/51‑1 (MQ=255) tttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGt < 1:155972/58‑1 (MQ=255) tttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAtt < 1:112814/63‑1 (MQ=255) tttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAtt < 1:4485041/63‑1 (MQ=255) tttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAtt < 1:2051070/63‑1 (MQ=255) tttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAt > 1:5864778/1‑62 (MQ=255) tttCTGCTCCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGt < 1:6409469/58‑1 (MQ=255) ttCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTc > 1:6632529/1‑71 (MQ=255) ctgctgCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAag > 1:3549708/1‑47 (MQ=255) ctgctgCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCgg > 1:2381024/1‑71 (MQ=255) ctgctgCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCgg > 1:4431415/1‑71 (MQ=255) ctgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:5282594/70‑1 (MQ=255) ctgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:794571/70‑1 (MQ=255) ctgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:6329209/70‑1 (MQ=255) ctgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:4100167/70‑1 (MQ=255) ctgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:2197661/70‑1 (MQ=255) tgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTc < 1:613657/53‑1 (MQ=255) tgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTc < 1:1835633/53‑1 (MQ=255) tgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTc < 1:2457989/53‑1 (MQ=255) tgctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTc < 1:6588655/53‑1 (MQ=255) ctCGGCGACATCGACCTTAATCACACCTCTGGCAATCAAGGAGAACAGTTCAt > 1:2105279/1‑53 (MQ=255) ctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAATAGTTCAt > 1:3716141/1‑53 (MQ=255) ctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTCAt > 1:2434396/1‑53 (MQ=255) ctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTCAt > 1:1673070/1‑53 (MQ=255) ctCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAGGAGAACAGTTCAt > 1:3923996/1‑53 (MQ=255) cGACATCGACCTTAATCAGACCGCTGGCAATCAAAGAGAACAGTTc < 1:487337/46‑1 (MQ=255) cATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcgc > 1:6902674/1‑71 (MQ=255) cATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcgc > 1:4002291/1‑71 (MQ=255) cATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCcgc > 1:6260582/1‑71 (MQ=255) aTCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTAc > 1:1772959/1‑47 (MQ=255) aTCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTAc > 1:3662351/1‑47 (MQ=255) aTCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTa > 1:4437772/1‑59 (MQ=255) aTCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTa > 1:1574108/1‑59 (MQ=255) aTCGACATTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTa > 1:5763743/1‑59 (MQ=255) cGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGtt < 1:4841023/39‑1 (MQ=255) cGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGtt < 1:6786272/39‑1 (MQ=255) cGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGtt < 1:1080882/39‑1 (MQ=255) gACCTTAATCACACCGCTGGCAATCAAAGAGAACAg > 1:2603139/1‑36 (MQ=255) gACCTTAATCACACCGCTGGCAATCAAAGAGAACAg > 1:5409280/1‑36 (MQ=255) gACCTTAATCACACCGCTGGCAATCAAAGAGAACAg > 1:677238/1‑36 (MQ=255) gACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATtcctcc < 1:4875345/64‑1 (MQ=255) aCCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCAt < 1:100134/40‑1 (MQ=255) aCCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGtt < 1:6818843/54‑1 (MQ=255) ccTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtggtg < 1:4202236/71‑1 (MQ=255) tAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGata > 1:5657688/1‑71 (MQ=255) tAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGata > 1:5758953/1‑71 (MQ=255) tAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGata > 1:672942/1‑71 (MQ=255) tAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGat > 1:5521021/1‑70 (MQ=255) aaTCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGata > 1:2551688/1‑70 (MQ=255) acacCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGat < 1:2535552/65‑1 (MQ=255) acCGCAGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCtt < 1:5178807/71‑1 (MQ=255) ccGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtggtg < 1:6902291/60‑1 (MQ=255) ccGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTg < 1:1137745/71‑1 (MQ=255) ccGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTg < 1:3392997/71‑1 (MQ=255) cGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTg > 1:4134031/1‑70 (MQ=255) cGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTg > 1:4691332/1‑70 (MQ=255) cGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTg > 1:732166/1‑70 (MQ=255) gCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAggg < 1:2470201/70‑1 (MQ=255) aTCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtggtg < 1:5677791/51‑1 (MQ=255) aTCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtggtg < 1:125746/51‑1 (MQ=255) aTCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgtggtg < 1:1411567/51‑1 (MQ=255) aTCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGatat < 1:3372172/55‑1 (MQ=255) aTCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAgg > 1:774852/1‑71 (MQ=255) tCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCgt < 1:6437412/46‑1 (MQ=255) tCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAggg < 1:5524139/71‑1 (MQ=255) cAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAg > 1:3187788/1‑55 (MQ=255) cAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGc > 1:4734950/1‑56 (MQ=255) cAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGc > 1:1358079/1‑71 (MQ=255) aaaGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCg > 1:3502415/1‑71 (MQ=255) | GCTGCGCATCCTTCAGCGGATATTTCTGCTGCTCGGCGACATCGACCTTAATCACACCGCTGGCAATCAAAGAGAACAGTTCATTACTGGCCTCGGTTAATTCCTCCCGCGTGGTGATATAGCCTTGCAGGGAAGGGCG > Exported/2802181‑2802319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |