| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 224551 = | NA (NA) | 4 (0.070) | 4/100 | NT | NA | noncoding (781/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | AP009048 | 224572 = | NA (NA) | noncoding (802/1542 nt) | rrsH | 16S ribosomal RNA | |||||
CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/224621‑224551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT > AP009048/224572‑224641 CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGTGTATCTAATCCTGTT > 1:4190970/1‑71CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:5230271/71‑1CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:4836402/71‑1CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:4506585/71‑1CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:4142426/1‑71CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:3100609/71‑1CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:2967578/71‑1 GCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:1079580/1‑68 AAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:4995741/1‑63 CCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:2737146/1‑53 CCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:841193/1‑50 AAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:1079259/1‑48 AGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:4886877/47‑1 AGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCAGTT > 1:2025333/1‑47 GACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:3032989/1‑43 ACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:123406/42‑1 ATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:4577531/1‑40 ATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:1262811/40‑1 TCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT < 1:1318686/39‑1 GTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT > 1:4723896/1‑37 ACTACCAGGGTATCTAATCCTGTTAGTCCACGCCGTAAACGATGTCGACT < 1:1385475/50‑1 CCAGGGTATCTAATCCTGTTAGTCCACGCCGTAAACGATG < 1:2409401/40‑1 AGGGTATCTAATCCTGTTAGTCCACGCCGTAAACGATGT > 1:1485941/1‑39 GGGTATCTAATCCTGTTAGTCCACGCCGTAAACGA > 1:530791/1‑35 CTGTTAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAAC < 1:2534996/70‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT < 1:4132028/71‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT < 1:3898809/71‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT < 1:3654202/71‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT < 1:4971048/71‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT < 1:2256361/71‑1 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGT > 1:1548915/1‑70 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGT > 1:2694815/1‑70 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGT > 1:4780523/1‑70 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGT > 1:231753/1‑70 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAAC > 1:829321/1‑66 TAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGA < 1:2103717/45‑1 CACGCCTCAAGGGCACAACCTCCAAGTCGACATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/224621‑224551‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAGTCCACGCCGTAAACGATGTCGACTTGGAGGTTGTGCCCTTGAGGCGTGGCTTCCGGAGCTAACGCGTT > AP009048/224572‑224641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |