| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 225889 = | NA (NA) | 4 (0.080) | 4/88 | NT | NA | noncoding (131/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | AP009048 | 225907 = | NA (NA) | noncoding (149/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 120 total aligned reads displayed.
TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225965‑225889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > AP009048/225907‑225975 TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA < 1:1877134/71‑1TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA < 1:1210970/71‑1TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:1512274/1‑71TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:2154069/1‑71 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:3723800/1‑70 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:3980547/1‑70 ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:20126/1‑70 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA < 1:4560166/71‑1 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:1670233/1‑71 CTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC > 1:2727925/1‑70 TTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA > 1:2648453/1‑70 cttATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:3659984/4‑71 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:4667083/1‑71 TAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:4093884/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2141088/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:556246/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:1602484/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:1324757/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:1913064/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:3307454/1‑71 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC < 1:4672769/69‑1 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA < 1:2497778/68‑1 AGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC > 1:1982699/1‑67 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:680963/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:1438909/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT > 1:3334698/1‑71 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:1030809/71‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT > 1:789718/1‑71 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:1122555/70‑1 GATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:2440588/70‑1 ATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:3107217/70‑1 TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2831689/1‑65 TTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:4491479/1‑60 AGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:1383510/1‑57 GTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:4196808/62‑1 aCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC > 1:1428812/2‑56 CCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA < 1:2223828/51‑1 CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:5240924/56‑1 CCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC < 1:4048035/53‑1 CGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTTTCGACACACTATCAT > 1:56825/1‑60 CGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:1115951/1‑53 GGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC > 1:3740674/1‑49 GTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:440267/53‑1 GTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:1312371/53‑1 CGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT < 1:2585703/50‑1 TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC > 1:2831464/1‑45 TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC > 1:1089461/1‑41 TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC > 1:4008165/1‑41 TCATTAACCTATGGATTCAGTTAATGATACTGTGTCGAAAC < 1:2757214/41‑1 CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:1449843/1‑39 ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:1411750/1‑38 ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAA < 1:3096359/38‑1 AACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:5266094/40‑1 AACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:2264913/1‑35 AACCTATGGATTCAGTTAATGATAGTGTGTCGAAA > 1:804066/1‑35 CTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT > 1:5349915/1‑38 TATGGATTCAGTTAATGATAGTGTGTCGAAACACA > 1:38527/1‑35 ATGGATTCAGTTAATGATAGTGTGTCGAAACACAC < 1:4295908/35‑1 TGATAGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAA > 1:1846546/1‑71 AGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA > 1:2332384/1‑66 AGTGTGTCGAAACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCG > 1:2615519/1‑55 GAAACACACTATCATTAACTGAATCCATAGGTTAA > 1:2450119/1‑35 ACACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAAC > 1:2081240/1‑42 ACACACTATCATTAACAGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT > 1:1323472/1‑61 CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGA < 1:2866677/71‑1 CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:3550414/70‑1 CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:4917044/70‑1 CACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCG < 1:5373039/70‑1 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:3426653/1‑71 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:1955091/1‑71 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:5179086/1‑71 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGT > 1:4454992/1‑63 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAACTACCCCG > 1:2327224/1‑69 ACACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA > 1:3640861/1‑53 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGG < 1:2475509/71‑1 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:4897019/1‑70 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAG > 1:955733/1‑70 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT < 1:427458/58‑1 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAA < 1:313425/53‑1 CACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAA < 1:2394922/52‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAG < 1:2341315/60‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCT < 1:2948987/57‑1 ACTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGA < 1:1670522/45‑1 CTATCATTAACTGAATCCATGGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:3825934/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:1051973/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:3845834/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:894795/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA < 1:1319399/71‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGA > 1:3447329/1‑70 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTA > 1:3454869/1‑57 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACAT > 1:4090681/1‑54 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC > 1:3358980/1‑52 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC > 1:4006777/1‑52 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTG < 1:1884595/48‑1 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAA > 1:5081954/1‑45 CTATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGG < 1:3204441/40‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > 1:2837532/1‑70 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > 1:3579713/1‑70 TATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAG < 1:4569284/58‑1 TATCATTAACTGAATCCATAGGTTAATGAGGCGAAC > 1:1708635/1‑36 TACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/225965‑225889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacactATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAACATCTAAGTACCCCGAGGAA > AP009048/225907‑225975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |