New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 226560NA (NA)3 (0.060) 3/90 NT NA noncoding (802/2904 nt) rrlH 23S ribosomal RNA
?AP009048 = 226568 NA (NA)noncoding (810/2904 nt) rrlH 23S ribosomal RNA

GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226484‑226560
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagaACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTA  <  AP009048/226568‑226499
                                                                                                                                                   
GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:169479/71‑1
 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:2840218/71‑1
 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:2578408/71‑1
 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             >  1:2057199/1‑71
 AGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:4943147/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:1143592/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:3673142/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:4850136/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:181501/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:566645/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:1627882/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:1688105/71‑1
  GGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:1168093/71‑1
   GACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           <  1:899914/71‑1
   GACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           <  1:2022527/71‑1
   GACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:3556535/69‑1
    ACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGA                                                                          <  1:978460/71‑1
    ACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2460377/1‑69
    ACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             <  1:2386406/68‑1
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:4117538/71‑1
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:3302804/71‑1
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2480107/1‑68
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:1443481/1‑68
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2109375/1‑68
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2224845/1‑68
     CCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             >  1:780462/1‑67
     CCGAACCGACTAATCTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:1851086/71‑1
      CGATCCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:4559173/1‑67
      CGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        <  1:3597608/71‑1
      CGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        <  1:1899033/71‑1
      CGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2383/1‑67
      CGAACCGACTAATGTTGAAAAATTGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:2188735/1‑70
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:3438912/1‑70
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:3432875/1‑70
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:4536949/1‑70
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:3392547/1‑70
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGA                                                                          >  1:2372485/1‑68
       GAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:3830528/66‑1
        AACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:1818777/1‑69
        AACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           <  1:910799/66‑1
         ACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:2869872/1‑68
         ACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:1988602/1‑68
          CCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:4320133/66‑1
             ACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA                                                                        >  1:2250766/1‑64
               TAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGA                                                                          <  1:4345426/60‑1
               TAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:4111037/58‑1
               TAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:2081947/1‑58
                    TTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGAACCAGCTATCTCCC                                                          <  1:180945/71‑1
                    TTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:573978/56‑1
                    TTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           >  1:306946/1‑54
                       AAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGAACCAGCTATCTCCCGG                                                        <  1:987756/70‑1
                       AAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:1897319/50‑1
                       AAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             >  1:265716/1‑49
                        AAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGAACCAGCTATCTCCCG                                                         <  1:4644359/68‑1
                        AAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         >  1:3738578/1‑52
                         AAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGA                                                                          >  1:2301445/1‑50
                               GCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           >  1:5195689/1‑43
                                 GGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCG                                                                             >  1:2647055/1‑39
                                  GATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            <  1:3893123/39‑1
                                   ATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         >  1:805448/1‑41
                                     GACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGG                                                                           >  1:1862725/1‑37
                                     GACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGG                                                                            >  1:1288467/1‑36
                                        TTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:494397/36‑1
                                        TTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAG                                                                         <  1:1766906/36‑1
                                                                       GGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA       <  1:146523/71‑1
                                                                       GGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA       <  1:3478195/71‑1
                                                                       GGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACA                            <  1:2693304/50‑1
                                                                        GGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAA       >  1:2218888/1‑70
                                                                        GGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAA               >  1:568815/1‑62
                                                                        GGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCAT                      <  1:2557825/55‑1
                                                                         GAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACA     >  1:4679644/1‑71
                                                                          AGAACCAGCTATCTCCCGTTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    <  1:1899548/71‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCATCCACAAGTCATCCGCTAATTTTT          <  1:1528149/65‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCTCTAATTTTTCAACAT    <  1:3196159/71‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    >  1:4489934/1‑71
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    >  1:4591348/1‑71
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    >  1:100699/1‑71
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    <  1:4804610/71‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    >  1:1553662/1‑71
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    <  1:3645946/71‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    <  1:5262845/71‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAAT              <  1:348032/61‑1
                                                                          AGAACCAGCTATCTCCCGGTTTGATTGGCCTATCACCCCCAGCCACAAGTCATCCGCTAATTTTTCA        <  1:196731/67‑1
                                                                           GAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACAT    >  1:3066571/1‑70
                                                                           GAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACA     >  1:2041357/1‑69
                                                                           GAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAA                           <  1:3068901/47‑1
                                                                            AACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTA  <  1:488146/71‑1
                                                                            AACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTA  <  1:3037888/71‑1
                                                                            AACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTA  <  1:2702971/71‑1
                                                                            AACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTA                <  1:2707407/57‑1
                                                                                                                                                   
GAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/226484‑226560
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagaACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTA  <  AP009048/226568‑226499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.