New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 315215 =NA (NA)5 (0.090) 5/94 NT NA coding (405/867 nt) insF IS3 element protein InsF
?AP009048 315238 = NA (NA)coding (428/867 nt) insF IS3 element protein InsF

Only 100 of 108 total aligned reads displayed.

TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315288‑315215
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  AP009048/315238‑315306
                                                                                                                                               
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3111666/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:2602149/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:5234109/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:1929335/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:4930174/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3030740/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3149520/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3295130/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:744204/71‑1
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:770547/71‑1
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:828125/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:4140111/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:667171/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:2170274/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:2197075/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:656454/1‑71
 AACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:87716/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGTCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:3239248/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:462575/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:2732254/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:3739453/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:3884401/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:585307/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:632086/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:2395526/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:1683383/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:2034762/1‑71
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:1701440/71‑1
  ACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         <  1:1252169/70‑1
   tGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:3511666/69‑1
   CGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       <  1:715489/71‑1
   CGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       <  1:2727861/71‑1
   CGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       >  1:282192/1‑71
   CGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          >  1:4868046/1‑68
    GGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       <  1:721862/70‑1
     GCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       <  1:4140301/69‑1
         GTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:3722401/1‑63
         GTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:5227328/62‑1
         GTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:300298/62‑1
         GTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3066187/62‑1
            ACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:25515/1‑60
            ACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:667257/59‑1
            ACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:3437200/59‑1
                     CAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:4921777/1‑51
                     CAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:3595708/1‑51
                     CAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:2688111/1‑51
                      AATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:2230460/1‑50
                       ATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:4624805/1‑50
                        TGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:1563220/1‑49
                        TGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        <  1:4103316/49‑1
                         GACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGAT                                                                        >  1:4570057/1‑48
                            CACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG                                                                       <  1:733088/46‑1
                                  CAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:3701996/1‑38
                                  CAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:4589990/1‑38
                                  CAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTG                                                                          <  1:1298430/37‑1
                                   AGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGA                                                                         >  1:2395353/1‑37
                                                CTTCATCTGTACGTAAGTACGTGATGAAGGCTGGCTGTATCTGGCAGTGGTCA                                            <  1:604586/53‑1
                                                  TCATCTGTACGTAAGTACAGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGT                                <  1:4073611/62‑1
                                                   CATCTGTACGTAAGTACGTGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCG                       >  1:4464046/1‑71
                                                    ATCTGTACGTAAGTACGTGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTG                          <  1:1054442/67‑1
                                                     TCTGTACGTAAGTACGTGATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGT                      <  1:266831/70‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    <  1:4654364/71‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    <  1:966690/71‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    <  1:2755820/71‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    <  1:1460754/71‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    >  1:3144138/1‑71
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    >  1:1263667/1‑71
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCA         <  1:817948/66‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTG                          <  1:1335516/49‑1
                                                                      GATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGG                                 >  1:380855/1‑42
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   <  1:4173407/71‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   <  1:2647935/71‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   >  1:67104/1‑71
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   >  1:4979813/1‑71
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   >  1:2879388/1‑71
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCG   <  1:105298/71‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    >  1:2800418/1‑70
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGT     <  1:1421918/69‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGT     <  1:22870/69‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGC               <  1:582012/59‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTC                               <  1:3514152/43‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGT                                <  1:1364991/42‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGT                                   <  1:3436274/39‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGGTCATTGAC                                       <  1:894028/35‑1
                                                                       ATGAAGGCTGGCTGTATCTGGCAGTGCTCATTGACCTG                                    <  1:1008701/38‑1
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  <  1:2135704/71‑1
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  <  1:1576361/71‑1
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  <  1:2697214/71‑1
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  1:5107313/1‑71
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  <  1:4958410/71‑1
                                                                        TGAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  <  1:3002229/71‑1
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  1:3488901/1‑70
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  1:3900174/1‑70
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  1:4267322/1‑70
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTC    >  1:2756213/1‑68
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAA        >  1:5351996/1‑64
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTC          >  1:1415901/1‑62
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTG             >  1:801002/1‑59
                                                                         GAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGG                                 >  1:2783662/1‑39
                                                                         GAAGGCTGGCTGTATCTCGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTAGCTGGTCAATGTCGC  >  1:813386/1‑70
                                                                                                                                               
TAACGGCACGTGACCACAGGTCAATGACCACTGCCAGATACAGCCAGCCTTCATCTGTACGTAAGTACGTGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/315288‑315215
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgAAGGCTGGCTGTATCTGGCAGTGGTCATTGACCTGTGGTCACGTGCCGTTATTGGCTGGTCAATGTCGC  >  AP009048/315238‑315306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.