| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 637964 | 76 (1.300) | 4 (0.080) | 3/92 | NT | 5.7% | intergenic (‑168/‑204) | dsbG/ahpC | periplasmic disulfide isomerase/thiol‑disulphide oxidase/alkyl hydroperoxide reductase, C22 subunit |
| ? | AP009048 | = 637979 | 64 (1.210) | intergenic (‑183/‑189) | dsbG/ahpC | periplasmic disulfide isomerase/thiol‑disulphide oxidase/alkyl hydroperoxide reductase, C22 subunit | |||||
TTATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/637891‑637964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaaCTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACATG < AP009048/637979‑637910 TTATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACT > 1:852921/1‑71TTATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACT > 1:651568/1‑71 TATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACT < 1:58265/70‑1 ATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTG < 1:1114590/70‑1 TGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA < 1:105704/71‑1 TGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA < 1:5058735/71‑1 AGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTG > 1:1701345/1‑67 AGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTG > 1:1942687/1‑67 TTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA > 1:1085043/1‑63 GTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTG < 1:2103597/50‑1 GTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTG < 1:4441537/50‑1 TCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGA < 1:1427019/50‑1 CATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA > 1:5234003/1‑42 TTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAACTACCCTTTGGTATCTTCAGT > 1:4225901/1‑61 TTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAACTACCCTTTGGTATCTTCAGT > 1:637487/1‑61 GGCAACACCTCAGCCTGCAGGCAGGCACTGAACTACCCTTTGGTATCT < 1:3943686/48‑1 GCAACACCTCAGCCTGCAGGCAGGCACTGAACTACCC < 1:1159710/37‑1 CTGAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGA > 1:2171602/1‑71 CTGAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGA > 1:1872842/1‑71 TGAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAG > 1:4459325/1‑43 GAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTAC > 1:3532501/1‑55 GAACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTAC > 1:615964/1‑55 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAc > 1:3799831/1‑64 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACA < 1:1311856/70‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACA < 1:814687/70‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACA < 1:1041094/70‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGAC < 1:3334128/69‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGA < 1:3689550/68‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGA < 1:2874169/68‑1 AACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTT‑CCCTTACAAATGCAACAACGACATG > 1:5271829/1‑71 ACTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACATG < 1:4308566/71‑1 TTATGAGGGTGTTGTAATCCATGTCGTTGTTGCATTTGTAAGGGCAACACCTCAGCCTGCAGGCAGGCACTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/637891‑637964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaaCTACCCTTTGGTATCTTCAGTGCCTGCCTGCAGGCTGAGGTGTTGCCCTTACAAATGCAACAACGACATG < AP009048/637979‑637910 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |