| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 900889 | 48 (0.820) | 4 (0.080) | 3/88 | NT | 7.8% | coding (109/732 nt) | artJ | arginine transporter subunit |
| ? | AP009048 | = 900904 | 53 (1.050) | coding (94/732 nt) | artJ | arginine transporter subunit | |||||
ATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/900814‑900889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctatCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGCCTTG < AP009048/900904‑900836 ATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCA > 1:4019707/1‑71ATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCA < 1:4153937/71‑1 TTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCAC > 1:1431342/1‑71 CCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTAT < 1:5085091/70‑1 CCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTA < 1:2430042/69‑1 CCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTA > 1:4228939/1‑69 CACAAGGCTTTTGCTAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTATCCACCCTTTGAATCT < 1:3822751/71‑1 GGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTATCCACCCTTTGAATCTATAGG < 1:1014974/71‑1 TTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCA > 1:279772/1‑41 ATCGATATCAAAGCCGACAATCTCATTATTAGCACCTAT > 1:1657230/1‑39 GATATCAAAGCCGACAATCTCATTATTAGCACCTATCCACCCTTTGAATCTATAGG < 1:4948805/56‑1 CCGACAATCTCATTATTAGCACCTATCCACCCTTTGAATCTATAG < 1:2674714/45‑1 ACCTATCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGC > 1:1173953/1‑71 ACCTATCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGC > 1:1216366/1‑71 ACCTATCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAA > 1:668812/1‑69 CCTATCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTT < 1:5275847/50‑1 TATCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATA > 1:256322/1‑52 TCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGCCTTG < 1:3775547/70‑1 TCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGCCTTG < 1:2871834/70‑1 TCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGCCTT < 1:3718816/69‑1 ATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCTCATTATTAGCACCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/900814‑900889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacctatCCACCCTTTGAATCTATAGGTGCTAATAATGAGATTGTCGGCTTTGATATCGATCTGGCAAAAGCCTTG < AP009048/900904‑900836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |