| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3136909 | 41 (0.700) | 5 (0.100) | 3/88 | NT | 10.6% | coding (270/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | AP009048 | = 3136919 | 49 (0.970) | coding (260/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
ACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3136834‑3136909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctcgcTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCTAACGGCTCGCCGCG < AP009048/3136919‑3136850 ACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTT > 1:3562949/1‑71 CCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTC < 1:2136887/71‑1 CCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTC < 1:317666/71‑1 CCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCT > 1:2642695/1‑71 CCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACT < 1:3716991/68‑1 GCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTC > 1:1437795/1‑70 CGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCG > 1:4099417/1‑70 CGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCG > 1:3419232/1‑70 GAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCTGCGCTTCCTGCGAGAA < 1:962853/71‑1 GAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCTGCGCTTCCTGCGAGAA < 1:553336/71‑1 GAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCTGCGCTTCCTGCGAGAA < 1:1988490/71‑1 GCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCTGCGCTTCCTGCGAGAAGT < 1:4566824/71‑1 AGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCT > 1:2607009/1‑43 CTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGCTGCGCTTCCTGCGAGA < 1:3332281/53‑1 TTCTCGCTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCTAACGGCTC > 1:2827453/1‑71 CTCGCTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCTAACGGCTCG < 1:4940493/70‑1 GCTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCTAACGGCTCGCC < 1:4248169/69‑1 GCTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCT < 1:3310991/58‑1 GCTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATT‑CAGGCATTTCCTAACGGCTCGCCGCG < 1:3973050/71‑1 ACCCGCGACCGGCGCACGCGGCGAGCCGTTAGGAAATGCCTGCAATGGCAGGATGTTGTCATTAACCACTTCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3136834‑3136909‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctcgcTGCGCTTCCTGCGAGAAGTGGTTAATGACAACATCCTGCCATTGCAGGCATTTCCTAACGGCTCGCCGCG < AP009048/3136919‑3136850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |