| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3574453 = | 72 (1.230) | 5 (0.100) | 4/88 | NT | 8.0% | intergenic (‑19/+83) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase |
| ? | AP009048 | 3574473 = | 53 (1.050) | intergenic (‑39/+63) | yihN/yihM | predicted transporter/predicted sugar phosphate isomerase | |||||
ATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3574522‑3574453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttaaaGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTATTAGTGG > AP009048/3574473‑3574542 ATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAA > 1:3258307/1‑70 AACCATTCCATATGAATGGTCTGTATCTTATTGCCTTTAAAACAGTGATTTTAAA < 1:1729290/55‑1 TTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAA > 1:2577792/1‑49 CATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAA < 1:2807564/47‑1 GGTCGGTATCTTATTGCCTTTAAAACAGTGATTTT < 1:3877682/35‑1 TTAAAACAGTGATTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTT > 1:5090038/1‑56 TAAAACAGTGATTTTAAAGGCAATAAGATACAGACCATT‑CATATGGAATGGTTTTATTAACTGCTTATGAG > 1:720371/1‑71 AAAACAGTGATTTTAAAGGCAATAAGATACCGACCATTCCATATGaa < 1:709648/47‑3 AAAACAGTGATTTTAAAAGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAAC > 1:1523792/1‑60 AACAGTGATTTTAAAGGCAATAAGATACCGACCATT‑CAT > 1:1195124/1‑39 TTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTAT < 1:469923/71‑1 TTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTA < 1:811960/70‑1 TTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTT < 1:485601/69‑1 TTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTT < 1:1882962/69‑1 TTTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAA < 1:1339659/66‑1 TTTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTT < 1:3555968/68‑1 TTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTATT < 1:2207735/70‑1 TTAAAGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGC > 1:1170369/1‑51 AGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTATTAGTGG < 1:1914962/71‑1 ATACGCAGTTAATAAAACCATTCCATATGAATGGTCGGTATCTTATTGCCTTTAAAACAGTGATTTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3574522‑3574453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttaaaGGCAATAAGATACCGACCATT‑CATATGGAATGGTTTTATTAACTGCGTATGAGTTAAAACTTATTAGTGG > AP009048/3574473‑3574542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |