| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | AP009048 | 3,742,936 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AP009048 | 3742936–3744264 | 3744271 | 8–1336 | 84 [0] | [0] 82 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3742935 | 0 (0.000) | 66 (1.340) | 44/86 | NT | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | AP009048 | 3744272 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 105 total aligned reads displayed.
ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3742859‑3742935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGA > AP009048/3744272‑3744339 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTG < 1:3534893/70‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:3205364/71‑1 TGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:3267671/71‑1 GGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTG < 1:1557059/68‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:893368/71‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:3222590/71‑1 GACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAA < 1:1800323/70‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:171396/71‑1 ACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:1766315/71‑1 CAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG < 1:4029396/71‑1 CAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG > 1:4679359/1‑71 GACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:3531153/71‑1 GACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGG < 1:4427448/71‑1 GACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG < 1:1239108/69‑1 ACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGT > 1:3320203/1‑71 AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGT < 1:3080952/71‑1 AGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAA < 1:218112/59‑1 GCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT > 1:5240617/1‑71 GGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC < 1:5104841/71‑1 GCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:3904957/71‑1 CTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:2688049/57‑1 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:2744406/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:5226886/1‑71 AAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG > 1:4011849/1‑56 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:3361736/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:13103/1‑70 AAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:2288218/1‑70 AGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:383371/1‑67 GTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT > 1:3579232/1‑71 GTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT > 1:5343709/1‑71 TTCTATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATT < 1:1638840/50‑1 TTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC > 1:4140692/1‑71 TTCGATTCAGACAAGCGTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC > 1:803227/1‑71 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG > 1:4904739/1‑71 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG > 1:211889/1‑71 CGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTG > 1:4260910/1‑49 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGT > 1:5110614/1‑71 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGG < 1:3600592/70‑1 GATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAAT < 1:2153946/46‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG < 1:5181092/48‑1 ATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:1031149/42‑1 TTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:4706605/1‑71 TCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:2712256/1‑71 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGC < 1:3348423/71‑1 AGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:307978/1‑70 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATG > 1:88076/1‑68 ACAAGCTTATTACAACTTTTTTACATTTTATTGTGA < 1:774022/36‑1 CAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCAT > 1:2458131/1‑71 CAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCAT > 1:4193545/1‑71 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:1797648/71‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCA < 1:4977217/51‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTT > 1:1514059/1‑48 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGT < 1:3484789/47‑1 AAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTC > 1:1137866/1‑43 AGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCG < 1:1002062/71‑1 GCTTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA < 1:2725030/71‑1 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACG > 1:2009056/1‑71 TTATTACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA > 1:671099/1‑52 TTATTACAACTTTTTTACATTTTATTGTGAAATTGG > 1:4545878/1‑36 TTATTACAACTTTTTTACATTTTATTGTGAAATTG < 1:201315/35‑1 ACAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:2110109/1‑41 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:81068/71‑1 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGA < 1:4560375/46‑1 CAACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTC > 1:255249/1‑40 ACTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATAC > 1:1947160/1‑42 CTTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT < 1:5142308/45‑1 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT > 1:4773356/1‑71 TTTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAA < 1:2357833/67‑1 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTA > 1:3644274/1‑49 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGAT > 1:4879025/1‑42 TTTTTACATTTTATTGTGAAATTGGGTCGCGTTTCAT > 1:4738617/1‑37 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:4110118/1‑37 TTTTACATTTTATTGTGAAATTGGGTCGCGTTTAATACGATTCGG > 1:6596/1‑45 TTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTT < 1:444242/70‑1 TTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTT < 1:3323578/68‑1 TTTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTAGGTTATGCCATCGACGCGTAAAGGTTTT < 1:1764023/70‑1 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTT > 1:3457767/1‑69 TTACATTTTATTGTGAAATTGGGTCGCGTTTCATA > 1:4390993/1‑35 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:2510856/70‑1 TACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTC < 1:1268486/40‑1 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAA < 1:4806472/70‑1 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTA < 1:819571/69‑1 ACATTTTATTGTGAAATTGGGTCGCGTTTCATACG > 1:89516/1‑35 CATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATG > 1:4150946/1‑71 ATTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATC < 1:2306333/49‑1 ATTTTATTGTGAAATTGGGTCGCGTTTCATACGATT < 1:5330791/36‑1 TTTTATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:1165420/1‑50 TTTATTGTGAAATTGGGTCGCGTTTCATACGATT‑GGTTATGCTATCGACGCGTAA < 1:1297082/55‑1 TATTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTAT > 1:2894947/1‑39 TTGTGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCC < 1:1728911/70‑1 TGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCAT > 1:257268/1‑39 GAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGA > 1:1764514/1‑41 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:1032483/1‑71 AAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAA < 1:3334064/70‑1 AATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:5289279/1‑70 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGc > 1:2589863/1‑37 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGCCGCGTAAAGGTTTTTAATGGTTTCCCGTAAC > 1:2583611/1‑69 ATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTT > 1:671474/1‑51 TTGTGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAG < 1:761548/71‑1 TTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGT > 1:2652862/1‑58 ATGGACAGACTAAAGCGGCTAAAAGTTCGATTCAGACAAGCTTATTACAACTTTTTTACATTTTATTGTGAAATTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3742859‑3742935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGA > AP009048/3744272‑3744339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |