| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4274083 = | 90 (1.540) | 4 (0.080) | 3/90 | NT | 5.5% | coding (256/417 nt) | yjbQ | conserved hypothetical protein |
| ? | AP009048 | 4274101 = | 57 (1.100) | coding (274/417 nt) | yjbQ | conserved hypothetical protein | |||||
CTGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4274157‑4274083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catatcAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCACCTGG > AP009048/4274101‑4274169 CTGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCA > 1:5338147/1‑71CTGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCA > 1:784516/1‑71CTGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCA > 1:3427570/1‑71 TGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCA > 1:3788415/1‑70 AATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATAT > 1:929023/1‑71 AATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCAT < 1:5235176/69‑1 ATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC > 1:4392407/1‑71 ATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC < 1:4181983/71‑1 ATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC > 1:4627713/1‑71 ATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC < 1:4053806/71‑1 ATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC > 1:1623444/1‑71 ACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCA < 1:188148/65‑1 CGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATA < 1:2156708/40‑1 TTGATATGAGAAGGCATATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCG > 1:2390502/1‑70 TTGATATGAGAAGGCATATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCG > 1:1830072/1‑70 TATGAGAAGGCATATCAAATCCTCAATGCTGGGAACATCGCTTG > 1:702726/1‑44 TGAGAAGGCATATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAG < 1:54228/71‑1 GAAGGCATATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGT < 1:2732760/62‑1 CATATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCAC > 1:1815650/1‑71 CATATCAAATCCTCAATGCTGGGAACATCGCTTGTAT > 1:4076654/1‑37 CATATCAAATCCTCAATGCTGGGAACATCGCTTGTAT > 1:4070447/1‑37 CATATCAAATCCTCAATGCCGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCAC > 1:3025550/1‑71 ATATCAAATCCTCAATGCTGGGAACATCGCTTGTA > 1:4440323/1‑35 TATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCACCT > 1:3849693/1‑71 TATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCACCT > 1:3843511/1‑71 TATCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGCTGCATAAAGGGCGTATTCAGACCGGCACCT < 1:44458/71‑1 TCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCACCTGG > 1:2577302/1‑71 TCAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCG > 1:4219617/1‑63 CAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTGAGACCGGCACCTGG > 1:4095316/1‑70 CTGAATACGCCCTTTATGCACCGGCAATACAAGCGATGTTCCCAGCATTGAGGATTTGATATGAGAAGGCATATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4274157‑4274083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catatcAAATCCTCAATGCTGGGAACATCGCTTGTATTGCCGGTGCATAAAGGGCGTATTCAGACCGGCACCTGG > AP009048/4274101‑4274169 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |