| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4464552 | 65 (1.110) | 4 (0.080) | 4/84 | NT | 6.1% | intergenic (+17/+28) | cybC/nrdG | ECK4231:JW4195:b4236; cytochrome b562, truncated/anaerobic ribonucleotide reductase activating protein |
| ? | AP009048 | = 4464566 | 69 (1.430) | intergenic (+31/+14) | cybC/nrdG | ECK4231:JW4195:b4236; cytochrome b562, truncated/anaerobic ribonucleotide reductase activating protein | |||||
CGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4464474‑4464552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTT < AP009048/4464566‑4464498 CGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATT < 1:3541563/71‑1 AGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCC > 1:1756452/1‑71 GCTGCTGCATAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 1:13880/1‑71 GCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 1:331236/1‑71 GCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT < 1:4711432/71‑1 GCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 1:2870157/1‑71 CTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGT < 1:1540738/69‑1 CTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGT < 1:1836961/69‑1 AGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC < 1:5073501/60‑1 ACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTG < 1:4584719/58‑1 AACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAAC < 1:3592422/71‑1 AACGACCCGCAATTCATATCACAAGAAGTATCGTAAATTCCTCATTTCCCT > 1:3706036/1‑51 ACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACA < 1:4656745/71‑1 CGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT > 1:4968776/1‑49 AATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCC > 1:1988471/1‑40 ATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCT < 1:2384024/40‑1 ATCACAAGAAGTATCGTTAATTCCTCATTTCCCTG < 1:4706253/35‑1 AAGAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAAC > 1:2325517/1‑49 GAAGTATCGTTAATTCCTCATTTCCCTGTTACCTGAGTGCAGGCAACAG > 1:2012721/1‑49 CCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGT > 1:2454251/1‑71 CCCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACT > 1:2760146/1‑49 CCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGAT < 1:2959592/57‑1 CCTGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGAT < 1:2953430/57‑1 TGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTC < 1:3031165/48‑1 TGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATAC < 1:4622890/45‑1 TGTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATAATTCTTGTGATATGAATTGCGGGTCGT > 1:2758602/1‑71 GTTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGG > 1:5176868/1‑65 TTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTT < 1:928121/71‑1 TTACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATG < 1:1540835/56‑1 CGCAGGCTGCTGCAGAGCAACTGAAAACGACCCGCAATTCATATCACAAGAAGTATCGTTAATTCCTCATTTCCCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4464474‑4464552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttccctgttACCTGAGTGCAGGCAACAGGGAAATGAGGAATTAACGATACTTCTTGTGATATGAATTGCGGGTCGTTT < AP009048/4464566‑4464498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |