New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 30939384 (1.430)5 (0.090) 3/100 NT 5.5% coding (503/588 nt) yagZ conserved hypothetical protein
?AP009048 = 309413 91 (1.590)coding (483/588 nt) yagZ conserved hypothetical protein

Only 100 of 106 total aligned reads displayed.

GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGG  >  AP009048/309324‑309462
                                                                     |                                                                     
gcgTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggt                                                                      >  1:2107568/1‑71 (MQ=255)
gcgTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggt                                                                      <  1:2282623/71‑1 (MQ=255)
gcgTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                                       <  1:1259889‑M1/70‑1 (MQ=255)
gcgTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                                       <  1:1656424‑M1/70‑1 (MQ=255)
  gTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggtgg                                                                    <  1:58108/71‑1 (MQ=255)
   tCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggtgg                                                                    >  1:5157408/1‑70 (MQ=255)
   tCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggtgg                                                                    <  1:2245865/70‑1 (MQ=255)
       aCTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCa                                                               >  1:3236906/1‑71 (MQ=255)
       aCTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCa                                                               >  1:3537855/1‑71 (MQ=255)
        cTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAt                                                              >  1:86627/1‑71 (MQ=255)
        cTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGG                                                                       <  1:2050169‑M1/62‑1 (MQ=255)
          gTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg                                                            >  1:970852/1‑71 (MQ=255)
          gTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg                                                            >  1:1991518/1‑71 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAtt                                                             <  1:1007558/69‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAtt                                                             <  1:1278400/69‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtgg                                                           <  1:148362/71‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtgg                                                           <  1:2366662/71‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg                                                            <  1:226749/70‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg                                                            <  1:1531325/70‑1 (MQ=255)
           tACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtg                                                            <  1:187401/70‑1 (MQ=255)
            aCGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACT‑‑‑Gcggtaccaccaatgg                                                        >  1:848683‑M1/1‑55 (MQ=255)
             cGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggt                                                                      >  1:4683491/1‑58 (MQ=255)
              gCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtggtgg                                                        >  1:1772454/1‑71 (MQ=255)
                tAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTa                                                      >  1:163000/1‑71 (MQ=255)
                tAACGTCGCCGCTCCAGATGCCTTCAGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTa                                                      >  1:659324/1‑71 (MQ=255)
                  aCGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTAcc                                                    >  1:1237779/1‑71 (MQ=255)
                      cgccgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCAtt                                                             <  1:512054/58‑1 (MQ=255)
                      cgccgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCt                                                 >  1:3406563/1‑70 (MQ=255)
                      cgccgcTCCAGATGCCTTCCGGAAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCg                                                   >  1:2332928/1‑68 (MQ=255)
                       gccgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGAGGTGGTACCATTGGTGGTACCGCtga                                               >  1:5170255/1‑71 (MQ=255)
                         cgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatg                                             <  1:3230111/71‑1 (MQ=255)
                         cgcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatg                                             <  1:5065397/71‑1 (MQ=255)
                          gcTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatga                                            <  1:4936881/71‑1 (MQ=255)
                           cTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                           <  1:242992/71‑1 (MQ=255)
                           cTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                           <  1:3338236/71‑1 (MQ=255)
                            tCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTgatgat                                           <  1:3110256/70‑1 (MQ=255)
                             ccAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtggtgg                                                        >  1:4015745/1‑56 (MQ=255)
                             ccAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCtgatga                                            >  1:2909732/1‑68 (MQ=255)
                              cAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGatgatg                                          <  1:4881282/69‑1 (MQ=255)
                              cAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGga                                        <  1:2302793/71‑1 (MQ=255)
                               aGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggtggt                                                                   <  1:5081457/43‑1 (MQ=255)
                               aGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCggtggt                                                                   <  1:3073107/43‑1 (MQ=255)
                                 aTGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtggtgg                                                        <  1:3802638/52‑1 (MQ=255)
                                 aTGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGgag                                       >  1:968684/1‑69 (MQ=255)
                                  tGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAg                                    >  1:1316066/1‑71 (MQ=255)
                                  tGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAg                                    >  1:2273717/1‑71 (MQ=255)
                                   gCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                   >  1:2697634/1‑71 (MQ=255)
                                   gCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                   >  1:513862/1‑71 (MQ=255)
                                    ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGaa                                     <  1:5011197/68‑1 (MQ=255)
                                    ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                  <  1:2986957/71‑1 (MQ=255)
                                    ccTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                  >  1:4433320/1‑71 (MQ=255)
                                     cTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAgg                                   >  1:3938761/1‑69 (MQ=255)
                                      ttCCGGTAGAGTGCTGTAATCTGTTACTGCGGcggtaccaccaatggtac                                                     <  1:4988646‑M1/50‑19 (MQ=255)
                                      ttCCGGTAGAGTGCTGTAATCTGTTACTGCGGcggtaccaccaatggtac                                                     <  1:851708‑M1/50‑19 (MQ=255)
                                      ttCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGaa                                     <  1:1469148/66‑1 (MQ=255)
                                       tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                >  1:3618776/1‑70 (MQ=255)
                                       tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                >  1:3305253/1‑70 (MQ=255)
                                       tCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                >  1:3789106/1‑70 (MQ=255)
                                        ccGGTAGAGTGCTGTAATCTGTTACTGCGGcggtaccaccaatggtacca                                                   >  1:774292‑M1/1‑30 (MQ=255)
                                        ccGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGc                                                  <  1:4536442‑M2/51‑2 (MQ=255)
                                        ccGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGa                                <  1:3912748/69‑1 (MQ=255)
                                         cGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGaaa                              >  1:885960/1‑70 (MQ=255)
                                          ggTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATtggggg                                                        <  1:304310/43‑1 (MQ=255)
                                           gTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCa                           <  1:93865/71‑1 (MQ=255)
                                            tAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAAc                             <  1:5306206/68‑1 (MQ=255)
                                            tAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCAt                          <  1:692065/71‑1 (MQ=255)
                                             agagTGCTGTAATCTGTTACTGCGGtggtaccacaatggtaccacc                                                  >  1:113239‑M1/1‑25 (MQ=255)
                                              gagTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATcc                        >  1:1626682/1‑71 (MQ=255)
                                               agTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTg                                 <  1:1104346/61‑1 (MQ=255)
                                                gTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtg                      >  1:3934704/1‑71 (MQ=255)
                                                 tGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                     <  1:4389932/71‑1 (MQ=255)
                                                 tGCTGTAATCAGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCtgt                     >  1:649691/1‑71 (MQ=255)
                                                    tGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGt                                  <  1:5130701/55‑1 (MQ=255)
                                                     gTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCg                  >  1:3477928/1‑70 (MQ=255)
                                                      tAATCTGTTACTGTGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                >  1:5217039/1‑71 (MQ=255)
                                                      tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                >  1:2346606/1‑71 (MQ=255)
                                                      tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                >  1:4165259/1‑71 (MQ=255)
                                                      tAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCg                  <  1:4432039/69‑1 (MQ=255)
                                                       aaTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAAcc                            <  1:1601481/58‑1 (MQ=255)
                                                        aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCt                       >  1:1899059/1‑62 (MQ=255)
                                                        aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtgg              >  1:242953/1‑71 (MQ=255)
                                                        aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggtgg              >  1:3830758/1‑71 (MQ=255)
                                                        aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCggt                >  1:5250554/1‑69 (MQ=255)
                                                        aTCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCg                  >  1:701482/1‑67 (MQ=255)
                                                            gTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc           <  1:2378310/70‑1 (MQ=255)
                                                             ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGaaa                              <  1:5127363/50‑1 (MQ=255)
                                                             ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc           <  1:199566/69‑1 (MQ=255)
                                                             ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTAc           <  1:3036106/69‑1 (MQ=255)
                                                             ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACg          <  1:496724/70‑1 (MQ=255)
                                                             ttACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGa         <  1:4531349/71‑1 (MQ=255)
                                                              tACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAt        >  1:307401/1‑71 (MQ=255)
                                                               aCTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAt        <  1:4809911/70‑1 (MQ=255)
                                                                cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGAtt       <  1:5070042/70‑1 (MQ=255)
                                                                cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg      <  1:4635599/71‑1 (MQ=255)
                                                                cTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTg      <  1:4929210/71‑1 (MQ=255)
                                                                   cGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCt    <  1:1439944/70‑1 (MQ=255)
                                                                    ggtggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTTGTACGATTGCTg   >  1:984775/1‑70 (MQ=255)
                                                                    ggtggtACCATTG‑TGGTACCAccgcagtaacagattacagcactct                          >  1:113239‑M2/1‑21 (MQ=255)
                                                                     gtggtACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGTTTGCTgg  <  1:738530/70‑1 (MQ=255)
                                                                     gcggtaccaccaatggtaccaccgcagtaacagattacagcactctaccgg                     <  1:4536442‑M1/51‑51 (MQ=255)
                                                                     |                                                                     
GCGTCGAACTGTACGCTAACGTCGCCGCTCCAGATGCCTTCCGGTAGAGTGCTGTAATCTGTTACTGCGGTGGTACCATTGGTGGTACCGCTGATGATGGAGAAGGTGAAACCATCCTGTGCGGTGGTACGATTGCTGG  >  AP009048/309324‑309462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.