| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1518768 | 35 (0.600) | 3 (0.070) | 3/76 | NT | 8.8% | intergenic (+52/‑335) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein |
| ? | AP009048 | = 1518777 | 36 (0.830) | intergenic (+61/‑326) | ydcW/ydcX | medium chain aldehyde dehydrogenase/predicted inner membrane protein | |||||
GTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCATAG > AP009048/1518699‑1518838 | gTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGc < 1:5089933/71‑1 (MQ=255)gTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAG > 1:3069352‑M1/1‑70 (MQ=255) tCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATAATCTTGCGTACTGTCAGAGCa > 1:5052029/1‑71 (MQ=255) aTGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACt > 1:1740813/1‑71 (MQ=255) tGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTg < 1:1812839/71‑1 (MQ=255) gTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACGGAt > 1:1184798/1‑71 (MQ=255) ttAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGAtt < 1:3928481/71‑1 (MQ=255) ttAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGAtt < 1:4068750/71‑1 (MQ=255) aaaCATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTc < 1:768541‑M2/71‑2 (MQ=255) aaaCATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTc < 1:1449561‑M2/71‑2 (MQ=255) aaaCATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTc < 1:3386650‑M2/71‑2 (MQ=255) aaCATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTct < 1:4779699‑M2/71‑3 (MQ=255) cATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctct > 1:3773355‑M2/1‑67 (MQ=255) ttAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGaaatcagtgctctga < 1:3266317‑M1/71‑16 (MQ=255) ttAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctga < 1:584179‑M2/71‑7 (MQ=255) ttAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCATGCGTACTGTCAGAGCACTGAATTctctg < 1:1045277‑M2/70‑6 (MQ=255) aGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacag > 1:16383‑M2/1‑62 (MQ=255) aGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctct > 1:771669‑M2/1‑62 (MQ=255) gATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACt < 1:4305684/55‑1 (MQ=255) ataataTTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacagtac < 1:1991544‑M2/71‑13 (MQ=255) taataTTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGa > 1:66528/1‑55 (MQ=255) taataTTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacagtacg < 1:1489948‑M2/71‑14 (MQ=255) taataTTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacagt > 1:2544662‑M2/1‑58 (MQ=255) aataTTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACt < 1:873299/52‑1 (MQ=255) atatTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacagtac < 1:1100471‑M2/68‑13 (MQ=255) tatTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGAttt > 1:1302117/1‑55 (MQ=255) ttGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctctgacag < 1:3417958‑M2/62‑10 (MQ=255) ttGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGtgct < 1:1803643/70‑1 (MQ=255) ttGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGtgct < 1:290832/70‑1 (MQ=255) ttGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGtgct < 1:4660637/70‑1 (MQ=255) cAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGt < 1:512528/71‑1 (MQ=255) gATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGaaatc > 1:2582022‑M1/1‑39 (MQ=255) tCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGaaatcagtgctct < 1:2951341‑M1/50‑14 (MQ=255) cGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCaa > 1:5122047/1‑70 (MQ=255) cGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCaa > 1:2786326/1‑70 (MQ=255) cGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCa > 1:2599060/1‑69 (MQ=255) gTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCaaaa > 1:1308231/1‑71 (MQ=255) tAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAAt < 1:2178649/71‑1 (MQ=255) aaGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCaaa > 1:344236/1‑68 (MQ=255) aaGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAAt > 1:5272056/1‑70 (MQ=255) agagTATGAGATGATCTTGCGTACTGTCAGAGaaatcagtgct < 1:4621407‑M1/43‑12 (MQ=255) gTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGtgctgc > 1:882640/1‑57 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctc < 1:1710213‑M2/38‑4 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTctc < 1:1337227‑M2/38‑4 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACa < 1:2689078/70‑1 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACAt > 1:3080809/1‑71 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACAt < 1:4776293/71‑1 (MQ=255) tGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACAt < 1:1883518/71‑1 (MQ=255) agaTGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATc > 1:1719106/1‑70 (MQ=255) atgatCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCaaa < 1:754089/71‑1 (MQ=255) tgatCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAAt < 1:2241249/71‑1 (MQ=255) gatCTTGAGTACTGTCAGAGCACTGATTTCTCTGACAGTACGtgctgc > 1:2035955/1‑48 (MQ=255) gCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATaaa < 1:119772/67‑1 (MQ=255) gCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAAcc < 1:570962/69‑1 (MQ=255) gCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAAc < 1:2639190/68‑1 (MQ=255) gCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAg > 1:1748674/1‑71 (MQ=255) cGTACTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatatta < 1:1489948‑M1/71‑59 (MQ=255) gTACTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattat < 1:1991544‑M1/71‑60 (MQ=255) gTACTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatat < 1:1100471‑M1/68‑57 (MQ=255) tACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCa < 1:3798891/71‑1 (MQ=255) aCTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatatta > 1:2544662‑M1/1‑10 (MQ=255) aCTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCa > 1:2038749/1‑70 (MQ=255) cTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatcct > 1:16383‑M1/1‑9 (MQ=255) cTGTCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaa < 1:3417958‑M1/62‑54 (MQ=255) gTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAAtc > 1:2233344/1‑71 (MQ=255) tCAGAGaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaa < 1:584179‑M1/71‑66 (MQ=255) tCAGAGCACTGATTTctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaa < 1:3266317‑M2/71‑57 (MQ=255) tCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGcc > 1:2680691/1‑65 (MQ=255) tCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAAtct > 1:4698648/1‑71 (MQ=255) tCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAAACAGCCAAAtc < 1:4226085/70‑1 (MQ=255) cAGAGaattcagtgctctgacagtacgcatgatcatctcatactcttacgatctgcaatattatccttaa < 1:1045277‑M1/70‑66 (MQ=255) cAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAAt < 1:3746375/55‑1 (MQ=255) agagaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaatg > 1:3773355‑M1/1‑4 (MQ=255) agagaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatcct > 1:771669‑M1/1‑4 (MQ=255) agagCACTGATTTctctgacagtacgcaagatcatctcatactcttacga < 1:2951341‑M2/50‑38 (MQ=255) agagCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCa > 1:3665068/1‑71 (MQ=255) agagCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCa < 1:2916624/71‑1 (MQ=255) agagCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCa > 1:2927877/1‑71 (MQ=255) gagaaatcagtgctctgacagtacgcaagatcatctca < 1:1710213‑M1/38‑36 (MQ=255) gagaaatcagtgctctgacagtacgcaagatcatctca < 1:1337227‑M1/38‑36 (MQ=255) agaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaatgtt < 1:4779699‑M1/71‑70 (MQ=255) agCACTGATTTctctgacagtacgcaagatcatctcatactct < 1:4621407‑M2/43‑33 (MQ=255) agCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAAt > 1:349148/1‑52 (MQ=255) agCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCATa < 1:4370186/71‑1 (MQ=255) gaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaatgttt < 1:1449561‑M1/71‑71 (MQ=255) gaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaatgttt < 1:3386650‑M1/71‑71 (MQ=255) gaaatcagtgctctgacagtacgcaagatcatctcatactcttacgatctgcaatattatccttaatgttt < 1:768541‑M1/71‑71 (MQ=255) | GTCATGGTTAAACATTAAGGATAATATTGCAGATCGTAAGAGTATGAGATGATCTTGCGTACTGTCAGAGCACTGATTTCTCTGACAGTACGTGCTGCGTGCAAAATCACTACATCAAATAAACCAGCCAAATCTCATAG > AP009048/1518699‑1518838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |