| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2423050 = | 28 (0.480) | 3 (0.060) | 3/90 | NT | 9.1% | coding (524/1521 nt) | yfcC | predicted inner membrane protein |
| ? | AP009048 | 2423074 = | 35 (0.680) | coding (548/1521 nt) | yfcC | predicted inner membrane protein | |||||
CCTGCGCTGTTTATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATA > AP009048/2422980‑2423118 | actggcaaaaccgatttgcgtggcaatataggtcaccaggacggtgtaatactgtcatagcccagccggac < 1:889114‑M1/1‑1 (MQ=255) gcaaaaccgatttgcgtggcaatataggtcaccaggacggtggtaatactgtcatagcccagccggacc > 1:2987259‑M1/68‑69 (MQ=255) cgcTGTTTATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCa < 1:491741/69‑1 (MQ=255) aaaaccgatttgcgtggcaatataggtcaccaggacggtggtaatactgtcatagcccagccggaCCATTa > 1:4331595‑M1/66‑71 (MQ=255) aaaaccgatttgcgtggcaatataggtcaccaggacggtggtaatactgtcatagcccagccggaCCATTa > 1:1925034‑M1/66‑71 (MQ=255) aaccgatttgcgtggcaatataggtcaccaggacggtggtaatactgtcatagcccagccggaCCa < 1:4606141‑M1/3‑1 (MQ=255) tttATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTatca < 1:103226/70‑1 (MQ=255) tttATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTatca > 1:2260556/1‑70 (MQ=255) tATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTatcatc > 1:1936151/1‑70 (MQ=255) tGTTTTAACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCg > 1:694969/1‑71 (MQ=255) ttCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTaa > 1:1309700/1‑71 (MQ=255) cTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGt < 1:1428390/71‑1 (MQ=255) ataggtcaccaggacggtggtaatactgtcatagcccagccggaCCATTATCATCGCACCGCTaa > 1:2145120‑M1/45‑65 (MQ=255) aggtcaccaggacggtggtaatactgtcatagcccagccggaCCATTATCATCGCACCGCTAATg < 1:4639154‑M1/23‑1 (MQ=255) gtcaccaggacggtggtaatactgtcatagcccagccggaCCa > 1:4163506‑M1/41‑43 (MQ=255) ggcgCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCt < 1:3101241/71‑1 (MQ=255) ggcgCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCt > 1:309093/1‑71 (MQ=255) caccaggacggtggtaatactgtcatagcccagccggaCCATTATCATCGCACCGCTAATGGTcc < 1:817247‑M1/27‑1 (MQ=255) gcgGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTggg > 1:3763665/1‑71 (MQ=255) ggTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTatc < 1:3532254/43‑1 (MQ=255) ggTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGc > 1:2478910/1‑70 (MQ=255) ggTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGc > 1:17098/1‑70 (MQ=255) caggacggtggtaatactgtcatagcccagccggaCCATTa < 1:1666396‑M1/6‑1 (MQ=255) gTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAAt > 1:2453553/1‑56 (MQ=255) gTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAAt > 1:2320599/1‑56 (MQ=255) aggacggtggtaatactgtcatagcccagccggaCCAtt < 1:613496‑M1/5‑1 (MQ=255) tATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGcc < 1:497073/35‑1 (MQ=255) tttGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGc > 1:813062/1‑49 (MQ=255) ttGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGa > 1:3469625/1‑70 (MQ=255) tGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGAc < 1:1885325/70‑1 (MQ=255) ggTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACa < 1:1083031/70‑1 (MQ=255) ggTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACa < 1:3938655/70‑1 (MQ=255) tATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTa < 1:4767871/71‑1 (MQ=255) aTGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTg < 1:1785233/57‑1 (MQ=255) tGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTAt < 1:2642883/70‑1 (MQ=255) gaagaGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGt > 1:3467413/1‑44 (MQ=255) agagGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGGCCGGCTGGGCTATGACa < 1:362350/59‑1 (MQ=255) gagGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTa < 1:3632074/64‑1 (MQ=255) gTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGAc < 1:1489792/51‑1 (MQ=255) gTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGAAAGTATTACCACCGTCCTGGt < 1:567624/71‑1 (MQ=255) cGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGa > 1:2158130/1‑71 (MQ=255) tttGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTg < 1:3141815/66‑1 (MQ=255) tttGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCta > 1:1706430/1‑71 (MQ=255) ttGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCta > 1:1934014/1‑70 (MQ=255) tGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGa > 1:4619743/1‑42 (MQ=255) tGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCtata > 1:4537741/1‑71 (MQ=255) tGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCtata > 1:3241146/1‑71 (MQ=255) tGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCtata > 1:1343697/1‑71 (MQ=255) | CCTGCGCTGTTTATTCTGTTTTCACTTGGCGGCGCGGTATTTGGTATGGGAGAAGAGGCCGTCGCCTTTGCCATTATCATCGCACCGCTAATGGTCCGGCTGGGCTATGACAGTATTACCACCGTCCTGGTGACCTATA > AP009048/2422980‑2423118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |