| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2560691 | 46 (0.790) | 4 (0.070) | 3/96 | NT | 7.8% | coding (484/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization |
| ? | AP009048 | = 2560710 | 51 (0.930) | coding (465/501 nt) | yffI | predicted carboxysome structural protein with predicted role in ethanolamine utilization | |||||
ATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCC > AP009048/2560630‑2560761 | atgTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGac > 1:1170567/1‑70 (MQ=255) tAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGactact < 1:3512972/70‑1 (MQ=255) cGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGtaaacgcagt < 1:4449974‑M1/62‑11 (MQ=255) gggTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAc < 1:4849006‑M2/71‑2 (MQ=255) ggTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAcg < 1:2886588‑M2/71‑3 (MQ=255) gtgtTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAcgt > 1:874159‑M2/1‑68 (MQ=255) gtgtTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAcgt > 1:4798835‑M2/1‑68 (MQ=255) gttgtAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTaa > 1:2571448/1‑71 (MQ=255) ttgtAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACG < 1:4722251‑M1/46‑1 (MQ=255) tAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTaa > 1:4789744/1‑67 (MQ=255) aGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGactact < 1:4803887/54‑1 (MQ=255) aGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGttt < 1:3477367/60‑1 (MQ=255) gACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGAt < 1:587045/42‑1 (MQ=255) cacacCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGac < 1:1269197/47‑1 (MQ=255) cccGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGactac > 1:1180977/1‑47 (MQ=255) ccGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGact < 1:2722756/44‑1 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGtaaacgcagtagtcgttatcgt > 1:4486604‑M1/1‑33 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGtaaacgcagtagtcgttatcgt > 1:2026886‑M1/1‑33 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGATAAc < 1:145002/38‑1 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa > 1:1629460/1‑70 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa > 1:5185113/1‑70 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa > 1:2745774/1‑70 (MQ=255) ggCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa > 1:1610766/1‑70 (MQ=255) ggCACCTCAGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa > 1:4281763/1‑70 (MQ=255) cACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAag < 1:1498935/71‑1 (MQ=255) cACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAag < 1:3634432/71‑1 (MQ=255) cTCCGACAGGTTAATGGGGCTTGAGACGATAACGgct < 1:3000627/37‑1 (MQ=255) tCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGtt < 1:4687083/44‑1 (MQ=255) tCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCt > 1:1761824/1‑71 (MQ=255) ccGACAGGTTAATGGGGCTTGAGACGtaaacgcagtagtcgttatcgtc > 1:1319357‑M1/1‑26 (MQ=255) ccGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAc < 1:4207184‑M2/46‑2 (MQ=255) ccGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTg > 1:2126004/1‑71 (MQ=255) cGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTAcgt > 1:1209023‑M2/1‑44 (MQ=255) cGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTcc > 1:2385013/1‑54 (MQ=255) cGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaaaa > 1:33192/1‑64 (MQ=255) cGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGt > 1:5206097/1‑71 (MQ=255) cGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGt > 1:1685799/1‑71 (MQ=255) gACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACg < 1:5251507/50‑1 (MQ=255) gACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTcc > 1:5301690/1‑53 (MQ=255) gACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTg < 1:1946964/69‑1 (MQ=255) aCAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTc < 1:1275979/71‑1 (MQ=255) cAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTc > 1:1065541/1‑70 (MQ=255) aGGTTAATGGGGCTTGAGACGATAACGACTACTGCGttt > 1:1640180/1‑39 (MQ=255) aGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGc > 1:4076296/1‑64 (MQ=255) aGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGa < 1:1847963/71‑1 (MQ=255) aaTGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCa > 1:2885323/1‑71 (MQ=255) aTGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCAt < 1:4495029/71‑1 (MQ=255) tGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGaa < 1:1916474/51‑1 (MQ=255) tGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCt > 1:299495/1‑58 (MQ=255) gggCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCAttt < 1:126111/70‑1 (MQ=255) gggCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTc < 1:5228398/71‑1 (MQ=255) cTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCAtt < 1:4105060/66‑1 (MQ=255) cTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTgg > 1:3192838/1‑71 (MQ=255) cTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTgg > 1:424220/1‑71 (MQ=255) ttGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGGAGAAAAGAGCTGTTCGAGCGCa < 1:2894379/63‑1 (MQ=255) tGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCt > 1:1547433/1‑71 (MQ=255) gagaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAagag > 1:2872897/1‑48 (MQ=255) gagaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCtt > 1:490817/1‑71 (MQ=255) gagaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCt < 1:1189887/70‑1 (MQ=255) agaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCttt < 1:2969892/71‑1 (MQ=255) agaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCtt < 1:2694977/70‑1 (MQ=255) gaCGATAACGACTACTGCGTTTAcgtctcaagccccattaacctgtcgg > 1:1319357‑M2/1‑23 (MQ=255) gaCGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCtttt > 1:4355922/1‑71 (MQ=255) aCGtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcggaggtgccgggtgtcctacaacac > 1:4798835‑M1/1‑3 (MQ=255) aCGtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcggaggtgccgggtgtcctacaacac > 1:874159‑M1/1‑3 (MQ=255) aCGtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcg > 1:1209023‑M1/1‑3 (MQ=255) aCGATAACGACTACTGCGTTTAcgtctcaagccccattaacctgtcggaggtgcc > 1:2026886‑M2/1‑22 (MQ=255) aCGATAACGACTACTGCGTTTAcgtctcaagccccattaacctgtcggaggtgcc > 1:4486604‑M2/1‑22 (MQ=255) cGtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcggaggtgccgggtgtcctacaacacc < 1:2886588‑M1/71‑70 (MQ=255) gtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcggaggtgccgggtgtcctacaacaccc < 1:4849006‑M1/71‑71 (MQ=255) gtaaacgcagtagtcgttatcgtctcaagccccattaacctgtcgg < 1:4207184‑M1/46‑46 (MQ=255) gATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTc > 1:4934361/1‑70 (MQ=255) | ATGTTAATGCCGGGTGTTGTAGGACACCCGGCACCTCCGACAGGTTAATGGGGCTTGAGACGATAACGACTACTGCGTTTACGTAACGTCCCGGCAGAAAAGAGCTGTTCGAGCGCATTTCTGGCTTTTTCC > AP009048/2560630‑2560761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |