| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2926963 | 52 (0.890) | 4 (0.070) | 3/96 | NT | 7.9% | coding (79/1290 nt) | sdaC | predicted serine transporter |
| ? | AP009048 | = 2926980 | 44 (0.800) | coding (96/1290 nt) | sdaC | predicted serine transporter | |||||
CTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATG > AP009048/2926895‑2927034 | cTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCt < 1:2984119/70‑1 (MQ=255)cTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTg > 1:869399/1‑71 (MQ=255) tCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGC > 1:2873510‑M1/1‑68 (MQ=255) cAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTggg > 1:1759141/1‑71 (MQ=255) aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCt < 1:667196/67‑1 (MQ=255) aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTgg < 1:3400932/69‑1 (MQ=255) aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTgg > 1:3892699/1‑69 (MQ=255) aaaCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGc < 1:605257/71‑1 (MQ=255) aaCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTAGGcc > 1:4575589/1‑71 (MQ=255) aCCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCt < 1:3928886/71‑1 (MQ=255) cAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCttt < 1:4320802/71‑1 (MQ=255) cAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCttt < 1:4267010/71‑1 (MQ=255) gCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCt < 1:2452564/61‑1 (MQ=255) gCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTac > 1:479290/1‑71 (MQ=255) cACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTggg > 1:1694539/1‑63 (MQ=255) cACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacg > 1:888249/1‑71 (MQ=255) aTTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggcac < 1:4479909/71‑1 (MQ=255) aTTGCGTCCAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggcac < 1:4499496/71‑1 (MQ=255) ttGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggcac < 1:614337/70‑1 (MQ=255) gCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGg < 1:3388371‑M2/70‑2 (MQ=255) cGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCcgtgccgtaaaggcccagc < 1:3108844‑M1/70‑20 (MQ=255) cGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGgca > 1:2141431‑M2/1‑68 (MQ=255) cGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACAATGTGGATGCTGGGCCTTTACGGCACGgca > 1:2322139‑M2/1‑68 (MQ=255) gTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCaa > 1:2224228/1‑71 (MQ=255) tCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCcgtgccgtaaaggcccagca > 1:4285665‑M1/1‑49 (MQ=255) tCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCcgtgccgtaaaggcccagca > 1:4457032‑M1/1‑49 (MQ=255) cGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacgg > 1:756903/1‑61 (MQ=255) gAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCg > 1:921939/1‑71 (MQ=255) aaaGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCgg > 1:5010147/1‑71 (MQ=255) aaaGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCg < 1:511985/70‑1 (MQ=255) aaGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGgc < 1:4292873/71‑1 (MQ=255) aaGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGgc > 1:2794094/1‑71 (MQ=255) aaGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGgc < 1:129385/71‑1 (MQ=255) aGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGgcg > 1:5023336/1‑71 (MQ=255) gACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGgcgc < 1:1466647/71‑1 (MQ=255) tctcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGcc > 1:4483799/1‑46 (MQ=255) tctcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTacggcac < 1:2767973/56‑1 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTa < 1:2504100/48‑1 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCggg < 1:1170647/69‑1 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCgg < 1:2792138/68‑1 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCg > 1:2354905/1‑71 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCg > 1:2497833/1‑71 (MQ=255) tcGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCg > 1:4309650/1‑71 (MQ=255) gTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGc < 1:3244397/68‑1 (MQ=255) gTAGTGCCTGGCGCAAGACAGACACCATCTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGc < 1:1676055/68‑1 (MQ=255) tGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGt < 1:5174915/71‑1 (MQ=255) gCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAAt < 1:3475375/53‑1 (MQ=255) ccTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTc > 1:4738371/1‑71 (MQ=255) ccTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTc < 1:1031681/71‑1 (MQ=255) ccTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTc < 1:832973/71‑1 (MQ=255) ccTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTc > 1:2177078/1‑71 (MQ=255) cTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTcc > 1:4041949/1‑71 (MQ=255) gcgcAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCt < 1:334743/69‑1 (MQ=255) gcgcAACACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCt < 1:3194240/69‑1 (MQ=255) gcAAGACAGACACCATGTGGATGCcgtgccgtaaaggccc < 1:2153753‑M1/40‑17 (MQ=255) agacagacACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCt < 1:2332126/64‑1 (MQ=255) agacagacACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATc < 1:3598856/71‑1 (MQ=255) agacagacACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGAGGGCGTGCTGTTcc > 1:547789/1‑63 (MQ=255) gacagacaCCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATc > 1:3701100/1‑70 (MQ=255) acagacaCCATGTGGATGCTGGGCCTTTACGGCACGGCAAt < 1:4152264/41‑1 (MQ=255) cagacaCCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGcc < 1:1040088/64‑1 (MQ=255) cacCATGAGGATGCTGGGCCTTTACCGCACGGCAATCGgcgc > 1:817742/1‑42 (MQ=38) ccATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGgt < 1:4851930/71‑1 (MQ=255) cATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGt < 1:4413632/50‑1 (MQ=255) cATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGgtg > 1:3673175/1‑71 (MQ=255) aTGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAAc < 1:1158502/63‑1 (MQ=255) tgtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGtt > 1:3106751/1‑71 (MQ=255) gtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGgtgt > 1:5112962/1‑69 (MQ=255) gtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTg > 1:5213419/1‑71 (MQ=255) tgccgtgccgtaaaggcccagcatccacattgtgtctgtcttgcgccaggcactacgagagtctttcgacg > 1:2322139‑M1/1‑3 (MQ=255) tgccgtgccgtaaaggcccagcatccacatggtgtctgtcttgcgccaggcactacgagagtctttcgacg > 1:2141431‑M1/1‑3 (MQ=255) tGCTGGGCCTTTACGGCACGgcatccacatggtgtctgtcttgcgccaggcactacgagagtctttcga > 1:4457032‑M2/1‑20 (MQ=255) tGCTGGGCCTTTACGGCACGgcatccacatggtgtctgtcttgcgccaggcactacgagagtctttcga > 1:4285665‑M2/1‑20 (MQ=255) tGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGt < 1:1190046/71‑1 (MQ=255) tGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGt < 1:896987/71‑1 (MQ=255) gCTGGGCCTTTACGGCACGgcatccacatggtgtctgtcttgcgccaggcactacgagagtctttcgacg < 1:3108844‑M2/70‑52 (MQ=255) ccgtgccgtaaaggcccagcatccacatggtgtctgtcttgcgccaggcactacgagagtctttcgacgc < 1:3388371‑M1/70‑70 (MQ=255) cTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTG‑CAATCAACGCCGGTGTTGGCGGTATg < 1:255532/71‑1 (MQ=255) | CTCAAACCAGCACGATTGCGTCGAAAGACTCTCGTAGTGCCTGGCGCAAGACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATG > AP009048/2926895‑2927034 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |