| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3261133 | 0 (0.000) | 38 (0.700) | 31/94 | NT | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | AP009048 | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT > AP009048/3261064‑3261200 | tCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAc > 1:4866295‑M1/1‑70 (MQ=255)tCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAc > 1:3785155‑M1/1‑70 (MQ=255)tCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAc > 1:3748109‑M1/1‑70 (MQ=255) ccTTCATGAAAAATAATCTCTCTACAATACTTCATCTAAATTATGCAAATTCTGCGGGCGCGTTAAc < 1:4977161‑M1/67‑2 (MQ=255) ccTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActtt < 1:3802275‑M1/70‑5 (MQ=255) cTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgc > 1:2475263‑M1/1‑65 (MQ=255) cTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAct < 1:4818099‑M1/67‑3 (MQ=255) tCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcc > 1:98773‑M1/1‑63 (MQ=255) aTGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgccta < 1:4188389‑M1/70‑10 (MQ=255) aTGAAAAATAATCTCTCTACAATACTT‑AACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaa > 1:3914505‑M1/1‑60 (MQ=255) tGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaa > 1:3581268‑M1/1‑60 (MQ=255) aaaaaTAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatg < 1:1898031‑M1/71‑14 (MQ=255) aaaaaTAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaat > 1:1611183‑M1/1‑58 (MQ=255) aaaaaTAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaat > 1:2217334‑M1/1‑58 (MQ=255) aaaaaTAATCTCTCTACAATACTTAAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaat < 1:2220838‑M1/70‑13 (MQ=255) aaaaTAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatga < 1:1024699‑M1/71‑15 (MQ=255) aaaTAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaa < 1:5194568‑M1/71‑16 (MQ=255) aataatCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaa > 1:1999698‑M1/1‑55 (MQ=255) aatCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAA > 1:1720911‑M1/1‑52 (MQ=255) aatCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAA < 1:4442296‑M1/52‑1 (MQ=255) atCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggca > 1:1786131‑M1/1‑51 (MQ=255) tctctACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAA < 1:1325225‑M1/48‑1 (MQ=255) ctctACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatcc > 1:2958427‑M1/1‑47 (MQ=255) cAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagca < 1:973716‑M1/71‑30 (MQ=255) cAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaag < 1:1321234‑M1/69‑28 (MQ=255) aTACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaat < 1:1572428‑M1/71‑32 (MQ=255) tACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaat > 1:29778‑M1/1‑39 (MQ=255) cTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttg > 1:3045915‑M1/1‑37 (MQ=255) cTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAc > 1:4194810‑M1/1‑37 (MQ=255) ttCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatgg < 1:2734044‑M1/54‑19 (MQ=255) cAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatt < 1:4060188‑M1/69‑36 (MQ=255) cAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatt < 1:2459497‑M1/69‑36 (MQ=255) cAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatt < 1:560901‑M1/69‑36 (MQ=255) aaCTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt < 1:3397074‑M1/70‑38 (MQ=255) cTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttc < 1:2826793‑M1/71‑41 (MQ=255) aaaTTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaa > 1:4392515‑M1/1‑29 (MQ=255) aaaTTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaa > 1:1826154‑M1/1‑29 (MQ=255) aTTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcg > 1:1168164‑M1/1‑27 (MQ=255) ttATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgt < 1:2039891‑M1/71‑46 (MQ=255) ttATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatgg > 1:5363810‑M1/1‑26 (MQ=255) tGCAAATTCTGCGGGCCCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttag < 1:4733795‑M1/71‑49 (MQ=255) aaaTTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcg > 1:3882303‑M1/1‑20 (MQ=255) aTTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcgg > 1:765038‑M1/1‑18 (MQ=255) ttCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt < 1:834390‑M1/54‑38 (MQ=255) ttCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt < 1:240970‑M1/54‑38 (MQ=255) tCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgtt > 1:1343181‑M1/1‑16 (MQ=255) tCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaag > 1:4969218‑M1/1‑16 (MQ=255) tGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataa > 1:2089060‑M1/1‑14 (MQ=255) gggCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacgg < 1:1869121‑M1/71‑61 (MQ=255) cgcgTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcac < 1:903072‑M1/71‑64 (MQ=255) cgTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaa < 1:4540218‑M1/71‑66 (MQ=255) gTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttag < 1:1017598‑M1/53‑49 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaa < 1:3999943‑M1/69‑66 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcaca < 1:1890112‑M1/68‑65 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcaca < 1:3255272‑M1/68‑65 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttc < 1:248118‑M1/47‑44 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttc < 1:3728240‑M1/47‑44 (MQ=255) ttAActttgcctaaatgaatggcatccaaagcaatcattttttcttc < 1:3734494‑M1/47‑44 (MQ=255) tAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaat > 1:904493‑M1/1‑3 (MQ=255) tAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacgg > 1:649782‑M1/1‑3 (MQ=255) tAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaata > 1:3358157‑M1/1‑3 (MQ=255) aactttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaat > 1:3167777‑M1/1‑2 (MQ=255) | TCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT > AP009048/3261064‑3261200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |