| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3485246 | 48 (0.820) | 3 (0.060) | 3/92 | NT | 5.3% | coding (1664/2652 nt) | ppc | phosphoenolpyruvate carboxylase |
| ? | AP009048 | = 3485262 | 64 (1.210) | coding (1680/2652 nt) | ppc | phosphoenolpyruvate carboxylase | |||||
CAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTC > AP009048/3485176‑3485316 | cAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTG > 1:4945459‑M1/1‑71 (MQ=255) gCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGgcg > 1:2888043/1‑71 (MQ=255) cAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGgcgc < 1:559368/71‑1 (MQ=255) aaCAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCaa < 1:368135/71‑1 (MQ=255) aGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAatat > 1:3197999/1‑71 (MQ=255) aGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAatat < 1:4517439/71‑1 (MQ=255) gATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATc < 1:2270255/71‑1 (MQ=255) atgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAc > 1:3716346‑M2/1‑69 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGtgcctgatattgcgccca < 1:3508385‑M1/70‑19 (MQ=255) tgatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcag > 1:1955358‑M2/1‑68 (MQ=255) gatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcag < 1:2934165‑M2/70‑4 (MQ=255) gatTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcag < 1:1904096‑M2/70‑4 (MQ=255) atTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcagga < 1:172990‑M2/71‑6 (MQ=255) atTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcagga < 1:3533108‑M2/71‑6 (MQ=255) ttGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGAt > 1:2310462/1‑71 (MQ=255) cTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGtgcctgatattgcgcccaggaag > 1:982847‑M1/1‑45 (MQ=255) cTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCAt < 1:3837188/71‑1 (MQ=255) tATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCAt > 1:525086/1‑70 (MQ=255) aTTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcag > 1:1424298‑M2/1‑59 (MQ=255) ttCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAc > 1:2183447‑M2/1‑58 (MQ=255) ttCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGAt < 1:176606/64‑1 (MQ=255) ccGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAAt > 1:4972363/1‑70 (MQ=255) cGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCa < 1:886973/71‑1 (MQ=255) aCTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCaaa < 1:4537653/71‑1 (MQ=255) tCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcag > 1:2672181‑M2/1‑51 (MQ=255) aGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAAcc < 1:2226124/70‑1 (MQ=255) gCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCa < 1:762550/38‑1 (MQ=255) cAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCTATATc < 1:2689910/42‑1 (MQ=255) cAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATc < 1:3275161/42‑1 (MQ=255) aaaaGATGCGGGAGTGATGGCAGCTTCCTGtgcctgatattgcgccc < 1:3470051‑M1/47‑18 (MQ=255) aaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCAcagga < 1:2853396‑M2/50‑6 (MQ=255) aaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAATACCCGctt > 1:525573/1‑69 (MQ=255) aaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCg > 1:4284604/1‑70 (MQ=255) aaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCg > 1:656464/1‑70 (MQ=255) aaaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGa < 1:1304122/71‑1 (MQ=255) aaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAAc > 1:2585691/1‑64 (MQ=255) aaGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGa > 1:4025233/1‑70 (MQ=255) aGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCAt < 1:5229714/53‑1 (MQ=255) aGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGaaa < 1:3803511/71‑1 (MQ=255) aGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGaaa < 1:3198098/71‑1 (MQ=255) aGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGaa > 1:1611826/1‑70 (MQ=255) aGATGCGGGAGTGAGGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGaa > 1:4867516/1‑70 (MQ=255) tGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAAc < 1:4279252/60‑1 (MQ=255) cGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGc < 1:4318926/70‑1 (MQ=255) gggAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCgg > 1:1972105/1‑71 (MQ=255) ggAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCggg < 1:1736173/71‑1 (MQ=255) aGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTa > 1:4230482/1‑71 (MQ=255) gTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGaaa < 1:3646783/61‑1 (MQ=255) aTGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCg < 1:4222074/63‑1 (MQ=255) aTGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTg < 1:2229390/70‑1 (MQ=255) aTGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTg < 1:5221954/70‑1 (MQ=255) aTGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTg < 1:5248857/70‑1 (MQ=255) aTGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGa < 1:5164671/71‑1 (MQ=255) tGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTg < 1:533802/69‑1 (MQ=255) ggCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCaa < 1:5220787/45‑1 (MQ=255) ggCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCaa < 1:2007513/45‑1 (MQ=255) gCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCt < 1:2420059/71‑1 (MQ=255) aGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGc < 1:1698466/57‑1 (MQ=255) aGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGa < 1:3886703/71‑1 (MQ=255) aGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGa > 1:4342852/1‑71 (MQ=255) gCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGAc > 1:1938921/1‑71 (MQ=255) cTTCCTGGGCGCAATATCAGGCAcaggaagctgccatcactcccgcatcttttgctgagtcggaatag > 1:982847‑M2/1‑23 (MQ=255) cTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTAtt < 1:1779827/62‑1 (MQ=255) cTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAg > 1:4252142/1‑65 (MQ=255) cTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACg > 1:5236012/1‑71 (MQ=255) tCCTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaat < 1:172990‑M1/71‑67 (MQ=255) tCCTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaat < 1:3533108‑M1/71‑67 (MQ=255) tCCTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttt < 1:2853396‑M1/50‑46 (MQ=255) tCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTa > 1:2424285/1‑58 (MQ=255) ccTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCgg < 1:3602808/54‑1 (MQ=255) ccTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACgtt < 1:2755212/70‑1 (MQ=255) cTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaatca > 1:1955358‑M1/1‑3 (MQ=255) cTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaatc < 1:1904096‑M1/70‑68 (MQ=255) cTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaatc < 1:2934165‑M1/70‑68 (MQ=255) cTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaat > 1:1424298‑M1/1‑3 (MQ=255) cTGtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctga > 1:2672181‑M1/1‑3 (MQ=255) cTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACgttg < 1:2217795/70‑1 (MQ=255) tGGGCGCAATATCAGGCAcaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaatca < 1:3508385‑M2/70‑53 (MQ=255) gtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaatagccaatcat > 1:3716346‑M1/1‑1 (MQ=255) gtgcctgatattgcgcccaggaagctgccatcactcccgcatcttttgctgagtcggaa > 1:2183447‑M1/1‑1 (MQ=255) gggCGCAATATCAGGCAcaggaagctgccatcactcccgcatctttt < 1:3470051‑M2/47‑31 (MQ=255) gggCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTc > 1:265544/1‑71 (MQ=255) | CAGGGCAAACAGATGGTGATGATTGGCTATTCCGACTCAGCAAAAGATGCGGGAGTGATGGCAGCTTCCTGGGCGCAATATCAGGCACAGGATGCATTAATCAAAACCTGCGAAAAAGCGGGTATTGAGCTGACGTTGTTC > AP009048/3485176‑3485316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |