| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3511876 | 58 (0.990) | 3 (0.060) | 3/90 | NT | 5.0% | coding (2006/2199 nt) | priA | primosome factor n' |
| ? | AP009048 | = 3511884 | 62 (1.200) | coding (2014/2199 nt) | priA | primosome factor n' | |||||
ATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATATTG > AP009048/3511807‑3511946 | aTCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa < 1:660021/71‑1 (MQ=255) aGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCTAGCCCACTGGCAGACGAGAAACt < 1:3505807/70‑1 (MQ=255) aGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACt < 1:4088060/70‑1 (MQ=255) gCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACtgt < 1:4703528/71‑1 (MQ=255) gCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACtgt < 1:2044582/71‑1 (MQ=255) gCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACtgt < 1:5212860/71‑1 (MQ=255) aCGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa > 1:4286137/1‑65 (MQ=255) aCGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa > 1:3578451/1‑65 (MQ=255) aCGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa > 1:3531860/1‑65 (MQ=255) cgcgCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTggg > 1:3551431/1‑71 (MQ=255) cgcCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGtt < 1:1957379‑M2/71‑3 (MQ=255) ccATTGTTCCTGCAACAGCTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttct > 1:2215136‑M2/1‑67 (MQ=255) ccATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa < 1:4183302/60‑1 (MQ=255) ccATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttct > 1:4503844‑M2/1‑67 (MQ=255) cATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAcccacagtttctc < 1:4185970‑M1/71‑14 (MQ=255) ttGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAcccacagtttctcgt < 1:1188436‑M1/71‑16 (MQ=255) gTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA < 1:4817203‑M1/54‑1 (MQ=255) ttCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTcc < 1:1427981/71‑1 (MQ=255) ttCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTcc < 1:1406397/71‑1 (MQ=255) cTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGttctcg < 1:3202587‑M2/64‑7 (MQ=255) cTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGt < 1:4276483/71‑1 (MQ=255) gCAACAGCTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc > 1:690798/1‑71 (MQ=255) gCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc > 1:2143495/1‑71 (MQ=255) aacaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTcc < 1:435444/70‑1 (MQ=255) aacaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCg > 1:1681155/1‑71 (MQ=255) acaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCgg < 1:1233709/71‑1 (MQ=255) acaacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAA < 1:3134946‑M1/45‑1 (MQ=255) caacTGCGTAATCTGATCCTCTCCAGACCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGc > 1:3755058/1‑71 (MQ=255) aacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGct < 1:4546842/71‑1 (MQ=255) aacTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGct < 1:2382437/71‑1 (MQ=255) acTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctc < 1:2192381/71‑1 (MQ=255) cTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAAc > 1:4622863/1‑43 (MQ=255) cTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAAc > 1:2284971/1‑43 (MQ=255) tGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctct > 1:730033/1‑70 (MQ=255) tGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctct > 1:723615/1‑70 (MQ=255) gCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg > 1:3128513/1‑71 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACtgt < 1:2259597/43‑1 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc > 1:1820143/1‑61 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTc > 1:3386868/1‑61 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg < 1:445447/70‑1 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTgg < 1:2314933/70‑1 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTg < 1:2998540/69‑1 (MQ=255) cGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTg < 1:3110126/69‑1 (MQ=255) gTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGaaa > 1:3031538/1‑38 (MQ=255) gTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa < 1:3952935/71‑1 (MQ=255) gTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa < 1:2589177/71‑1 (MQ=255) aTCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACtgtg > 1:3036975/1‑40 (MQ=255) tCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTTTGGGTTCTCgg < 1:1552385/48‑1 (MQ=255) tCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCgg < 1:3341295/48‑1 (MQ=255) cTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCt > 1:3826722/1‑69 (MQ=255) cTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTa > 1:4845514/1‑70 (MQ=255) tGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa > 1:3154568/1‑71 (MQ=255) tGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa > 1:1561907/1‑71 (MQ=255) aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCAc > 1:2381151/1‑64 (MQ=255) aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa > 1:2384524/1‑69 (MQ=255) aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaa < 1:4216978/68‑1 (MQ=255) aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAAc < 1:4243563/70‑1 (MQ=255) aTCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAAc < 1:1251275/70‑1 (MQ=255) tCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGt < 1:2509877/71‑1 (MQ=255) ccTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGctc < 1:3265224/56‑1 (MQ=255) ctctCCAGCCCACTGGCAGACGAGAAcccacagtttc < 1:230310‑M1/37‑12 (MQ=255) ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGc < 1:3123123/59‑1 (MQ=255) ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg < 1:1676695/71‑1 (MQ=255) ctctCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg < 1:1460623/71‑1 (MQ=255) tctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa > 1:3334656/1‑59 (MQ=255) tctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGc > 1:4120425/1‑71 (MQ=255) ctcCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCg > 1:718961/1‑71 (MQ=255) ccAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGt > 1:3238489/1‑71 (MQ=255) cAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCgg < 1:2227727/69‑1 (MQ=255) cAGCCCAATGGCAGACGAGAAACTGTGGGTTCTCGGTCAGGTTCCGGCTCTGGCACCTAAACGTGGCGGTc < 1:2709080/71‑1 (MQ=255) gCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGc < 1:4134597/52‑1 (MQ=255) gCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgc < 1:2536444/71‑1 (MQ=255) cccACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgct < 1:3623422/71‑1 (MQ=255) ccACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctg < 1:472430/71‑1 (MQ=255) cTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGt < 1:3718267/57‑1 (MQ=255) tGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcg < 1:2833551/70‑1 (MQ=255) tGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctgg > 1:3211034/1‑68 (MQ=255) gCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg > 1:4829127/1‑56 (MQ=255) gCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcgctg > 1:4706882/1‑71 (MQ=255) aCGAGAAACTGTGGGttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaa < 1:1188436‑M2/71‑57 (MQ=255) aCGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTaaa > 1:5200048/1‑47 (MQ=255) cGAGAAcccacagtttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcag < 1:3202587‑M1/64‑59 (MQ=255) cGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGa < 1:4718484/71‑1 (MQ=255) gagaAACTGTGGGttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaatg < 1:4185970‑M2/71‑59 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGctct < 1:3753377/35‑1 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCa > 1:2727021/1‑39 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCAc > 1:3422640/1‑40 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACg > 1:5028937/1‑47 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTgg < 1:5324500/50‑1 (MQ=255) gagaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGa < 1:4678225/70‑1 (MQ=255) agaAcccacagtttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaatgg > 1:4503844‑M1/1‑4 (MQ=255) agaAcccacagtttctcgtctgccagtgggctggagaggatcagattacgcagctgttgcaggaacaatgg > 1:2215136‑M1/1‑4 (MQ=255) gaAACTGTGGGttctcgtctgccagtgggctggagag < 1:230310‑M2/37‑27 (MQ=255) gaAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTcgctggcg > 1:1456855/1‑60 (MQ=255) aacccacagtttctcgtctgccagtgggctggagaggatcagattacgcagttgttgcaggaacaatggcg < 1:1957379‑M1/71‑70 (MQ=255) aaCTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttg < 1:2816644/71‑1 (MQ=255) aaCTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATAttg < 1:669491/71‑1 (MQ=255) | ATCAGCACGCGCCATTGTTCCTGCAACAACTGCGTAATCTGATCCTCTCCAGCCCACTGGCAGACGAGAAACTGTGGGTTCTCGGTCCGGTTCCGGCTCTGGCACCTAAACGTGGCGGTCGCTGGCGCTGGCAGATATTG > AP009048/3511807‑3511946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |