| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3593079 | 47 (0.800) | 3 (0.060) | 3/90 | NT | 7.3% | coding (185/627 nt) | dsbA | periplasmic protein disulfide isomerase I |
| ? | AP009048 | = 3593101 | 35 (0.680) | coding (163/627 nt) | dsbA | periplasmic protein disulfide isomerase I | |||||
CACCCATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAACTCCAGCACTTGCGG > AP009048/3593011‑3593149 | caccCATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGaa < 1:2490210/71‑1 (MQ=255) cccATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGaaa > 1:4063999/1‑70 (MQ=255) ccATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAata < 1:5011902/71‑1 (MQ=255) cATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAatat < 1:789512/71‑1 (MQ=255) tGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGc < 1:1830274/71‑1 (MQ=255) gAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATg > 1:5226718/1‑69 (MQ=255) aaGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATg > 1:3896817/1‑68 (MQ=255) aaGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAg < 1:4098823/71‑1 (MQ=255) gTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAata < 1:483475/64‑1 (MQ=255) ttGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGa < 1:4913764/59‑1 (MQ=255) tGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGtttgaagaagttct > 1:1152078‑M1/1‑57 (MQ=255) aCGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAActtc > 1:3828813/1‑71 (MQ=255) tGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACttcttc < 1:1541000/71‑1 (MQ=255) ggTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACttcttc > 1:3676707/1‑70 (MQ=255) gTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCa < 1:1132933/70‑1 (MQ=255) aTTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAAc < 1:1500085‑M2/71‑2 (MQ=255) ttAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAAct < 1:1346480‑M2/70‑3 (MQ=255) tAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAActga < 1:3417963‑M2/71‑5 (MQ=255) acgtcAACTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAActga > 1:2278596‑M2/3‑67 (MQ=255) aTCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGtttgaagaagttctgcatatttctgataatg > 1:4716061‑M1/1‑40 (MQ=255) aTCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCa < 1:3117431/49‑1 (MQ=255) aTCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAActtc > 1:3088953/1‑56 (MQ=255) aTCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAg > 1:2946467/1‑69 (MQ=255) cTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAActgat < 1:4616743‑M2/65‑6 (MQ=255) cTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGt > 1:4022454/1‑71 (MQ=255) ttCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAActtct < 1:3194623/54‑1 (MQ=255) ttCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAg < 1:2627357/66‑1 (MQ=255) ttCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTg > 1:2062531/1‑71 (MQ=255) tCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGa < 1:3746701/47‑1 (MQ=255) tCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAActtct < 1:608639/53‑1 (MQ=255) cACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGaaa > 1:105873/1‑38 (MQ=255) cACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAg < 1:2765177/45‑1 (MQ=255) aCGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCgg > 1:4631778/1‑71 (MQ=255) cTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGc > 1:3922443/1‑60 (MQ=255) cTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCggg > 1:4486223/1‑68 (MQ=255) cTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCag < 1:2129487/71‑1 (MQ=255) cTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCa < 1:4658431/70‑1 (MQ=255) ccGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCag > 1:2926578/1‑68 (MQ=255) ggCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAgaagaa < 1:4898105/71‑1 (MQ=255) ggCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAgaagaa < 1:907845/71‑1 (MQ=255) ggCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAgaagaa < 1:3245112/71‑1 (MQ=255) gCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGaagaaa < 1:64616/71‑1 (MQ=255) cAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAActga < 1:3224933‑M2/49‑5 (MQ=255) aGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCa < 1:3510156/42‑1 (MQ=255) gTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGaagaaag < 1:2435673/69‑1 (MQ=255) gTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAagag < 1:2417171/71‑1 (MQ=255) ttttttCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGc < 1:4698774/50‑1 (MQ=255) tttttCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAgaga < 1:1008149/70‑1 (MQ=255) tttttCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAgaga > 1:3049454/1‑70 (MQ=255) ttttCTTCACATTATCAGtttgaagaagttctgcatatttc > 1:4903778‑M1/1‑18 (MQ=255) ttttCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAg > 1:2190837/1‑50 (MQ=255) ttttCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAagag > 1:1966554/1‑68 (MQ=255) tcttcACATTATCAGAAATATGCAGAACTTCTTCaaa > 1:454157/1‑37 (MQ=255) cttcACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGc < 1:1712090/44‑1 (MQ=255) cttcACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAAc < 1:2577983/70‑1 (MQ=255) cacaTTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAg > 1:4418247/1‑43 (MQ=255) cacaTTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAACTcc < 1:841015/70‑1 (MQ=255) cacaTTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAACTcc > 1:2090021/1‑70 (MQ=255) caTTATCAGAAATATGCAGAACTTCTTCAAActgataatgtgaagaaaaaactgccggaaggcgtgaagat > 1:4716061‑M2/1‑31 (MQ=255) aTTATCAGAAATATGCAGAACTTCTTCAAACTGATAg < 1:4934492/37‑1 (MQ=255) aTTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGaa < 1:677201/60‑1 (MQ=255) ttATCAGAAATATGCAGAACTTCTTCAAACTGATAGCa < 1:1428983/38‑1 (MQ=255) tATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGaa < 1:891275/58‑1 (MQ=255) aTCAGtttgaagaagttctgcatatttctgataatgtgaagaaaaaactgccggaaggcgtgaag < 1:4616743‑M1/65‑61 (MQ=255) aTCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAACTCCAGCACtt > 1:1783670/1‑71 (MQ=255) tCAGtttgaagaagttctgcatatttctgataatgtgaagaaaaaactgccggaaggcgtgaagttgacgt > 1:2278596‑M1/1‑4 (MQ=255) tCAGtttgaagaagttctgcatatttctgataatgtgaagaaaaaactgccggaaggcgtgaagatgacta < 1:3417963‑M1/71‑68 (MQ=255) tCAGtttgaagaagttctgcatatttctgataatgtgaagaaaaaactg < 1:3224933‑M1/49‑46 (MQ=255) aGtttgaagaagttctgcatatttctgataatgtgaagaaaaaactgccggaaggcgtgaagatgactaa < 1:1346480‑M1/70‑69 (MQ=255) gtttgaagaagttctgcatatttctgataatgtgaagaaaaaactgccggaaggcgtgaagatgactaaat < 1:1500085‑M1/71‑71 (MQ=255) gAAATATGCAGAACTTCTTCAAActgataatgtgaagaaaa > 1:4903778‑M2/1‑23 (MQ=255) | CACCCATGAAGTTGACGTGGTATTTAGTCATCTTCACGCCTTCCGGCAGTTTTTTCTTCACATTATCAGAAATATGCAGAACTTCTTCAAACTGATAGCAGTGCGGGCAGAAGAAAGAGAAAAACTCCAGCACTTGCGG > AP009048/3593011‑3593149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |