| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3846875 | 45 (0.770) | 5 (0.100) | 3/88 | NT | 10.5% | coding (144/858 nt) | htrL | hypothetical protein |
| ? | AP009048 | = 3846884 | 46 (0.910) | coding (153/858 nt) | htrL | hypothetical protein | |||||
CGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAACCAACA > AP009048/3846807‑3846944 | cGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATga < 1:1691278/71‑1 (MQ=255)cGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT > 1:4705584‑M1/1‑69 (MQ=255) tGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATgaga < 1:302817/71‑1 (MQ=255) gAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATg < 1:4442840/67‑1 (MQ=255) gAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAgat > 1:2608959/1‑71 (MQ=255) aaaaaCTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAgat > 1:2744339/1‑70 (MQ=255) aaaaaCTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAgat > 1:555043/1‑70 (MQ=255) aaCTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATgaga < 1:4016298/66‑1 (MQ=255) tAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTatt < 1:2073477‑M2/71‑4 (MQ=255) gCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTatttt > 1:1673161‑M2/1‑66 (MQ=255) gCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTattt > 1:657489‑M2/1‑66 (MQ=255) gCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTatt > 1:3898422‑M2/1‑66 (MQ=255) tCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTattttca < 1:1721864‑M2/71‑8 (MQ=255) gTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACt > 1:2465788/1‑71 (MQ=255) ttCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTattt > 1:2848938‑M2/1‑61 (MQ=255) ttCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACtt < 1:2173688/71‑1 (MQ=255) aGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTtct < 1:1647376/70‑1 (MQ=255) aGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTtct < 1:2656619/70‑1 (MQ=255) gttgttgttTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATgt < 1:5367842/50‑2 (MQ=255) gTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATga < 1:2398182/50‑1 (MQ=255) ttGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTccc > 1:4675209/1‑71 (MQ=255) ttGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTccc < 1:884732/71‑1 (MQ=255) tGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGatt > 1:4388490/1‑55 (MQ=255) tGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTattttca < 1:2553449‑M2/62‑8 (MQ=255) gATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTattttc > 1:95664‑M2/1‑54 (MQ=255) gATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGa > 1:811017/1‑71 (MQ=255) gATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAAT > 1:2992016‑M1/1‑45 (MQ=255) gTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTatttt > 1:5265795‑M2/1‑51 (MQ=255) gTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAttt > 1:1064382/1‑71 (MQ=255) tATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGa < 1:4296552/70‑1 (MQ=255) tATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGa < 1:3262178/70‑1 (MQ=255) ttttAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATg < 1:4434948/38‑1 (MQ=255) tttAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATga < 1:1477063/38‑1 (MQ=255) tttAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAAc < 1:3390560/70‑1 (MQ=255) aGTTACTTTGAGCGTCTGGCCGCACTTGAAAATaatcatc < 1:4215328‑M1/40‑8 (MQ=255) aGTTACTTTGAGCGTCTGGCCGCACTTGAAAATaatcatc < 1:3412330‑M1/40‑8 (MQ=255) aCTTTGAGCGTCTGGCCGCACTTGAAAATaatcatctcatttt > 1:3031238‑M1/1‑29 (MQ=255) aCTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGtt > 1:3158575/1‑71 (MQ=255) aCTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGt > 1:1476990/1‑70 (MQ=255) cTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAt < 1:3694800/55‑1 (MQ=255) cTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGtt > 1:3714913/1‑70 (MQ=255) tttGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAt < 1:4692756/54‑1 (MQ=255) tttGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAt < 1:1727930/54‑1 (MQ=255) tttGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCaa > 1:966501/1‑64 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATaatcatctcatt > 1:4059090‑M1/1‑25 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATaatcatctcatt > 1:3536789‑M1/1‑25 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGaa > 1:558991/1‑70 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGaa < 1:5086824/70‑1 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAg > 1:4174671/1‑71 (MQ=255) tGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAg > 1:5174806/1‑71 (MQ=255) gCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGa > 1:1494397/1‑71 (MQ=255) gCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGa < 1:3774875/71‑1 (MQ=255) gCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGa < 1:496277/71‑1 (MQ=255) cGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATCTGAAACCAAGGGTTGAAGCGAt < 1:4917780/71‑1 (MQ=255) gTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTg < 1:3132848/63‑1 (MQ=255) gTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGAtt > 1:1503554/1‑71 (MQ=255) tCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAttt < 1:5184844/48‑1 (MQ=255) tCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTc > 1:4425820/1‑71 (MQ=255) tGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCg > 1:4711569/1‑70 (MQ=255) gCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAAc < 1:4831623/49‑1 (MQ=255) cGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGAtt > 1:16241/1‑41 (MQ=255) cGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGaa > 1:429315/1‑58 (MQ=255) gCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACgg < 1:4434578/71‑1 (MQ=255) aCTTGAAAATGAGATGATTATTTTCACTTCTCCCGAttt > 1:1689103/1‑39 (MQ=255) aCTTGAAAATGAGATGATTATTTTCACTTCTCCCGAttt > 1:1912014/1‑39 (MQ=255) ttGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGaaaa > 1:3166637/1‑71 (MQ=255) ttGAAAATGAGATGATTATCTTCACTTCTCCCGATTTGAAACCAAGGGTTGa < 1:4830363/52‑1 (MQ=255) tGAAAATaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaacga < 1:1721864‑M1/71‑65 (MQ=255) tGAAAATaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatca < 1:2553449‑M1/62‑56 (MQ=255) tGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAAc > 1:787252/1‑71 (MQ=255) gAAAATaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatc > 1:95664‑M1/1‑6 (MQ=255) gAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGt > 1:388682/1‑47 (MQ=255) gAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGa > 1:3697147/1‑55 (MQ=255) gAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGAtt > 1:3790296/1‑57 (MQ=255) gAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAAc > 1:3031581/1‑63 (MQ=255) aaaaTaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaacgagc > 1:1673161‑M1/1‑5 (MQ=255) aaaaTaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaac > 1:5265795‑M1/1‑5 (MQ=255) aaaaTGAGATGATTattttcaagtgcggccagacgctcaaagt > 1:3031238‑M2/1‑14 (MQ=255) aaaTaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaacgagc > 1:657489‑M1/1‑4 (MQ=255) aaaTaatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaa > 1:2848938‑M1/1‑4 (MQ=255) aaaTGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAACcaa > 1:4644904/1‑71 (MQ=255) aataatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaacgagcta < 1:2073477‑M1/71‑69 (MQ=255) aataatcatctcattttcaagtgcggccagacgctcaaagtaactaaaataaacatcaactgaacgagc > 1:3898422‑M1/1‑3 (MQ=255) aaTGAGATGATTattttcaagtgcggccagacgctca > 1:4059090‑M2/1‑12 (MQ=255) aaTGAGATGATTattttcaagtgcggccagacgctca > 1:3536789‑M2/1‑12 (MQ=255) aaTGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAACcaa > 1:288756/1‑70 (MQ=255) aTGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAACcaaca < 1:877572/71‑1 (MQ=255) | CGTGAAAAACTAGCTCGTTCAGTTGATGTTTATTTTAGTTACTTTGAGCGTCTGGCCGCACTTGAAAATGAGATGATTATTTTCACTTCTCCCGATTTGAAACCAAGGGTTGAAGCGATTCGCAACGGAAAACCAACA > AP009048/3846807‑3846944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |