| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3873992 = | 92 (1.570) | 5 (0.090) | 5/94 | NT | 6.1% | coding (87/843 nt) | yibA | lyase containing HEAT‑repeat |
| ? | AP009048 | 4016461 = | 70 (1.300) | pseudogene (68/246 nt) | yrhC | ECK3468:JW5678:b4552; hypothetical protein fragment | |||||
Only 100 of 118 total aligned reads displayed.
CCCACCTCTTAACTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCT > AP009048/3873923‑3874062 | aatgtcaaatacataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactaa > 1:862171‑M1/70‑71 (MQ=255)aatgtcaaatacataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaacta > 1:5063121‑M1/70‑70 (MQ=255)aatgtcaaatacataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaacta < 1:1891231‑M1/1‑1 (MQ=255) cACCTCTTAACTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAaat < 1:1781493/71‑1 (MQ=38) ctctTAACTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAaataat < 1:702772/71‑1 (MQ=34) tctTAACTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAAtt > 1:4271608/1‑71 (MQ=34) tatataccagaaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactAAATAATtca > 1:4747618‑M1/61‑70 (MQ=255) aaCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcat > 1:743779/1‑70 (MQ=35) aaCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcat < 1:303403/70‑1 (MQ=35) aaCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcat > 1:2577655/1‑70 (MQ=35) aaCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcat > 1:2070853/1‑70 (MQ=35) aaCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtca < 1:2015607/69‑1 (MQ=35) aCTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtc < 1:681057/67‑1 (MQ=35) cTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcatcat > 1:2644569/1‑71 (MQ=34) cTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcatca > 1:4105764/1‑70 (MQ=35) tGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcatcat > 1:3222964/1‑70 (MQ=35) tAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTcatcatcat > 1:5074452/1‑71 (MQ=34) tAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTcatcatcat > 1:3407820/1‑71 (MQ=34) tAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTcatcatcat > 1:2429314/1‑71 (MQ=34) tAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTcatcatcat > 1:1372822/1‑71 (MQ=34) tAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTcatcatcat > 1:3827506/1‑71 (MQ=34) gaaaagaaaggcaagtaaagagtatggttaatataataaatgtaataaacta < 1:5032802‑M1/1‑1 (MQ=255) aaaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactAAATAATTCATCATCATTTAg > 1:2440056‑M1/51‑71 (MQ=255) ctctGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt < 1:1847721/71‑1 (MQ=34) ctctGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:1419044/1‑71 (MQ=34) ctctGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:1840523/1‑71 (MQ=34) ctctGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:558875/1‑71 (MQ=34) aaagaaaggcaagtaaagagtatggtttatataataaatgtaagaaactAAATAATTCATCATCATTTAGt > 1:4043281‑M1/50‑71 (MQ=255) tGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGtt < 1:2820973/69‑1 (MQ=35) tGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTc > 1:1256103/1‑71 (MQ=34) ggCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt > 1:2876780/1‑71 (MQ=34) gCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCtt < 1:5340209/71‑1 (MQ=34) cAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTa > 1:3171531/1‑71 (MQ=34) gATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGa < 1:1386580/42‑1 (MQ=38) gATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACa > 1:5293876/1‑71 (MQ=34) gATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACa > 1:2622849/1‑71 (MQ=34) aTGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGtt < 1:4257529/63‑1 (MQ=35) aTGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACa < 1:502363/70‑1 (MQ=35) aTGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAt < 1:3448042/71‑1 (MQ=34) aTGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAt > 1:2401206/1‑71 (MQ=34) tGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACAtt < 1:2181803/71‑1 (MQ=34) tGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCACTTAGTTTCTTACAtt > 1:4997088/1‑71 (MQ=21) agtaaagagtatggtttatataataaatgtaagaaactAAATAATtcatcat > 1:3064078‑M1/39‑52 (MQ=255) aaaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGttt < 1:587925/61‑1 (MQ=35) aaaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTg < 1:784209/70‑1 (MQ=37) aaaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTg < 1:5185569/70‑1 (MQ=37) aaaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGa < 1:2037548/71‑1 (MQ=38) aaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcatcatca < 1:3874135/52‑1 (MQ=35) aaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtcatcatca < 1:1638518/52‑1 (MQ=35) aaTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtca > 1:1557866/1‑46 (MQ=38) aTCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATtca < 1:3278616/45‑1 (MQ=38) tCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATta > 1:2419912/1‑71 (MQ=39) ccTTTTCAAGGAATTGTGATCATCAAGTAAGCGaaa < 1:1728993/36‑1 (MQ=40) ccTTTTCAAGGAATTGTGATCATCAAGTAAGCGaaa < 1:2556156/36‑1 (MQ=40) cTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTa > 1:844728/1‑60 (MQ=35) cTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATtata > 1:2555528/1‑71 (MQ=39) ttttCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATtata > 1:4418072/1‑70 (MQ=40) ttCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAg > 1:3069426/1‑50 (MQ=38) ttCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATtatat < 1:3634552/69‑1 (MQ=40) tCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATaa < 1:1748745/70‑1 (MQ=40) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCAtt < 1:901716/44‑1 (MQ=38) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCAtt < 1:1642652/44‑1 (MQ=38) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTa < 1:1576132/46‑1 (MQ=38) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAg > 1:4333591/1‑47 (MQ=38) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGt > 1:3868395/1‑48 (MQ=38) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATaa < 1:4225030/68‑1 (MQ=40) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAAc < 1:4592211/70‑1 (MQ=40) aaGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAAc > 1:1910906/1‑70 (MQ=40) aGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCa < 1:1078324/71‑1 (MQ=39) ggAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGa < 1:4067630/58‑1 (MQ=40) aaTTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATaa > 1:3284300/1‑64 (MQ=40) aaTTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATAc > 1:4258064/1‑71 (MQ=39) aTTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATAct < 1:3942578/71‑1 (MQ=39) taataaatgtaagaaactAAATAATTCATCATCATTTAGTTTc < 1:4290866‑M1/25‑1 (MQ=255) gtgATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCt < 1:4598864/44‑1 (MQ=35) gtgATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCtt > 1:2454769/1‑71 (MQ=38) tgATCATCAAGTAAGCGAAATAATTCATCATCATTTAGtt < 1:123112/40‑1 (MQ=33) atcatcAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATa > 1:3441506/1‑63 (MQ=35) atcatcAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATa > 1:52980/1‑63 (MQ=35) atcatcAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTAc < 1:5048378/71‑1 (MQ=34) catcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGAt > 1:614464/1‑48 (MQ=38) atcaAGTACGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATActc < 1:3421844/63‑1 (MQ=25) tcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGc > 1:4751661/1‑71 (MQ=34) tcaAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGc < 1:3422672/71‑1 (MQ=34) caAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGcc > 1:4809696/1‑71 (MQ=34) caAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGcc > 1:136913/1‑71 (MQ=34) aaGTAAGGGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCct < 1:2742252/71‑1 (MQ=21) aaGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCct > 1:3921718/1‑71 (MQ=34) gTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt > 1:4767215/1‑71 (MQ=34) gTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCcttt > 1:456716/1‑71 (MQ=34) aaGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATa > 1:1570530/1‑53 (MQ=35) gCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCa < 1:902123/49‑1 (MQ=38) cGAAATAATTCATCATCATTTAGTTTCTTACATTGAtt < 1:3944080/38‑1 (MQ=40) cGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCctttctt < 1:4800973/69‑1 (MQ=35) cGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCct < 1:334413/64‑1 (MQ=35) cGAAATAATTCATCATCATTTAGTTTATTACATTGATTATATAAACCATACTCTTTACTTGCCtttctttt < 1:3800575/71‑1 (MQ=21) gAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGc < 1:4544668/61‑1 (MQ=35) gAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGc < 1:3589832/61‑1 (MQ=35) gAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttc < 1:679945/71‑1 (MQ=34) AAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCtttcttttct > 1:3182320‑M1/1‑71 (MQ=255) | CCCACCTCTTAACTGTAATACTCTGGCAGATGAAATCCTTTTCAAGGAATTGTGATCATCAAGTAAGCGAAATAATTCATCATCATTTAGTTTCTTACATTGATTATATAAACCATACTCTTTACTTGCCTTTCTTTTCT > AP009048/3873923‑3874062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |