| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 962405 | 59 (1.010) | 3 (0.050) | 3/102 | NT | 5.2% | intergenic (+99/‑12) | cmk/rpsA | cytidylate kinase/30S ribosomal subunit protein S1 |
| ? | AP009048 | = 962430 | 50 (0.850) | coding (14/1674 nt) | rpsA | 30S ribosomal subunit protein S1 | |||||
ACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTT > AP009048/962360‑962497 | acaacCCCATCCGGCATGGAGCCAGGTGGAAGTTAAATATAAACCTGAAGATTAAACATGACTGAATCttt > 1:3421607/1‑71 (MQ=255) ccccATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCt > 1:384573/1‑71 (MQ=255) ccccATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCt > 1:1070800/1‑71 (MQ=255) cccATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTc < 1:4699782/71‑1 (MQ=255) aTCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAAc > 1:130948/1‑71 (MQ=255) ctgCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAActc < 1:2662350/68‑1 (MQ=255) ggCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCtt < 1:2903426/71‑1 (MQ=255) ggCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCtt > 1:2182483/1‑71 (MQ=255) gCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCttt > 1:2310513/1‑71 (MQ=255) cATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCttt > 1:2027965/1‑70 (MQ=255) cATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg < 1:3820803/71‑1 (MQ=255) aTGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg > 1:5187376/1‑70 (MQ=255) aTGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg > 1:5181103/1‑70 (MQ=255) aTGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg > 1:3014870/1‑70 (MQ=255) tGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGaa < 1:3409662/71‑1 (MQ=255) gAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGaa > 1:733381/1‑69 (MQ=255) ccAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTc < 1:4873916/71‑1 (MQ=255) ggTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCt > 1:2984102/1‑70 (MQ=255) gTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCtt > 1:1926689/1‑70 (MQ=255) gTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCt > 1:2876462/1‑69 (MQ=255) ggACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGa < 1:4010899/59‑1 (MQ=255) aCGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAActct < 1:553772/53‑1 (MQ=255) cGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGa < 1:4922398/71‑1 (MQ=255) gTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg < 1:4688583/54‑1 (MQ=255) ttAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCaa > 1:5341866/1‑46 (MQ=255) ttAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGaaa < 1:1491409/71‑1 (MQ=255) ttAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGaaa > 1:4532185/1‑71 (MQ=255) aaaTATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAAt < 1:3998283/70‑1 (MQ=255) aaaTATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATc > 1:4365528/1‑71 (MQ=255) aaTATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATc < 1:675103/70‑1 (MQ=255) aaTATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCg < 1:680692/71‑1 (MQ=255) atatAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGa < 1:239777/71‑1 (MQ=255) atatAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGa < 1:2562274/71‑1 (MQ=255) tataAACCTGAAGATTAAACATGACTGAATCTTTTGCt > 1:2071114/1‑38 (MQ=255) ataAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAagag < 1:2917520/52‑1 (MQ=255) taAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGaa > 1:393747/1‑48 (MQ=255) taAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGa < 1:2524129/62‑1 (MQ=255) aaCCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGaa > 1:4887290/1‑46 (MQ=255) aaCCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTc > 1:3921698/1‑51 (MQ=255) aCCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATc < 1:4031873/63‑1 (MQ=255) cTGAAGATTAAACATGACTGAATCTTTaggtttatatttaacgtccacctggctc > 1:3680821‑M2/1‑27 (MQ=255) cTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAagag < 1:405540/46‑1 (MQ=255) cTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAagag < 1:1577396/46‑1 (MQ=255) cTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAAcccgcc > 1:5246128/1‑71 (MQ=255) gAAGATTAAACATGACTGAATCTTTaggtttatatttaacgtcca < 1:2880728‑M2/45‑21 (MQ=255) gAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCt > 1:578208/1‑48 (MQ=255) gAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTaaaa > 1:4815554/1‑53 (MQ=255) aGATTAAACATGACTGAATCTTTTGCTCAACTCttt > 1:2482989/1‑36 (MQ=255) aGATTAAACATGACTGAATCTTTTGCTCAACTCTTTg < 1:4227349/37‑1 (MQ=255) tAAACATGACTGAATCTTTTGCTCAACTCTTTGaa > 1:3668464/1‑35 (MQ=255) aaCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGa < 1:2401045/53‑1 (MQ=255) aaCATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAAc > 1:983980/1‑56 (MQ=255) cATGACTGAATCTTCaggtttatatttaacgtccacctggctccatgccggatggggttgtttaa < 1:4625846‑M2/65‑51 (MQ=255) aTGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCg < 1:543116/49‑1 (MQ=255) aTGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAAc < 1:1803649/53‑1 (MQ=255) aTGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCt < 1:3273157/66‑1 (MQ=255) cTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCg < 1:5287271/45‑1 (MQ=255) aaTCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGc > 1:3650305/1‑71 (MQ=255) tCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCTAAAc > 1:3009403/1‑44 (MQ=255) ttGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGaaa > 1:1358517/1‑39 (MQ=255) ttGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCgtt < 1:498562/68‑1 (MQ=255) | ACAACCCCATCCGGCATGGAGCCAGGTGGACGTTAAATATAAACCTGAAGATTAAACATGACTGAATCTTTTGCTCAACTCTTTGAAGAGTCCTTAAAAGAAATCGAAACCCGCCCGGGTTCTATCGTTCGTGGCGTT > AP009048/962360‑962497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |