| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1432252 | 44 (0.750) | 3 (0.060) | 3/90 | NT | 7.4% | coding (1490/3363 nt) | stfR | predicted tail fiber protein |
| ? | AP009048 | = 1432258 | 36 (0.700) | coding (1496/3363 nt) | stfR | predicted tail fiber protein | |||||
CAGTACGTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAACAACATTAACGCGGT > AP009048/1432190‑1432327 | cAGTACGTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGtc < 1:997153‑M2/71‑3 (MQ=255) gTACGTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGtctg > 1:3053952‑M2/1‑67 (MQ=255) tACGTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGt < 1:4934580‑M2/67‑2 (MQ=255) gTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGa < 1:491775/71‑1 (MQ=255) gTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGa < 1:3451987/71‑1 (MQ=255) tCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGaa < 1:3133152/71‑1 (MQ=255) tCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGaa < 1:2116584/71‑1 (MQ=255) aaaCGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACga > 1:2063060/1‑58 (MQ=255) aaaCGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAg < 1:768518/69‑1 (MQ=255) aaaCGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAg < 1:422733/69‑1 (MQ=255) aaCGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGa > 1:3876677/1‑69 (MQ=255) aCGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGAc > 1:854352/1‑69 (MQ=255) cGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGAc > 1:718918/1‑68 (MQ=255) gCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAg > 1:1756116/1‑70 (MQ=255) cTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGaa < 1:1197486/71‑1 (MQ=255) tGGCGGCAACGCCAAAGGAAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGaa < 1:3783373/70‑1 (MQ=255) gcggcAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACgg > 1:278715/1‑71 (MQ=255) gcggcAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACgg > 1:4126340/1‑71 (MQ=255) cggcAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgc < 1:1369425/71‑1 (MQ=255) gcAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGgcgc < 1:4997133/71‑1 (MQ=255) cAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGa > 1:1458761/1‑58 (MQ=255) cAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCt > 1:3773156/1‑71 (MQ=255) aaCGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAg < 1:4938359/56‑1 (MQ=255) aaCGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGaa < 1:2199438/63‑1 (MQ=255) aCGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAg > 1:1634737/1‑51 (MQ=255) cGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGa > 1:5247166/1‑70 (MQ=255) cGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGa > 1:1961393/1‑70 (MQ=255) ccAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGt < 1:4297932‑M2/42‑2 (MQ=255) aaGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATAcc > 1:1043800/1‑71 (MQ=255) ggCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGa < 1:1646337/44‑1 (MQ=255) cAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGAt < 1:2110134/71‑1 (MQ=255) cAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGAt < 1:4250907/71‑1 (MQ=255) gTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATaa < 1:2134304/71‑1 (MQ=255) tAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAg < 1:3231179/71‑1 (MQ=255) aaaaTCAGCCTATGACAATGCAGAGAAACGtctgc < 1:3789544‑M2/35‑6 (MQ=255) aaaaTCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAgg > 1:2651565/1‑71 (MQ=255) aaaTCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAgg > 1:3750443/1‑70 (MQ=255) aaTCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGa < 1:2830695/40‑1 (MQ=255) aGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGc < 1:5229577/70‑1 (MQ=255) aGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCt > 1:669063/1‑71 (MQ=255) aGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCt < 1:2913592/71‑1 (MQ=255) gCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGa < 1:3487961/50‑1 (MQ=255) ccTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTc > 1:1308609/1‑71 (MQ=255) tGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTg > 1:175629/1‑70 (MQ=255) aCAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGaa > 1:2274107/1‑70 (MQ=255) cAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGa < 1:4032451/42‑1 (MQ=255) aaTGCAGAGAAACGtctgcattgtcataggctgattttactgcctttggcgttgccg > 1:4611856‑M2/1‑14 (MQ=255) aaTGCAGAGAAACGtctgcattgtcataggctgattttactgcctttggcg > 1:3522782‑M2/1‑14 (MQ=255) aaTGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAgg < 1:434015/55‑1 (MQ=255) tGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCt > 1:2453062/1‑59 (MQ=255) tGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAacaaca > 1:4503029/1‑71 (MQ=255) gCAGAGAAACGtctgcattgtcataggctgattttactgccttt > 1:1844267‑M2/1‑11 (MQ=255) agaAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAACAACATTAAc > 1:2613313/1‑71 (MQ=255) gaAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAACAACATTAAcg < 1:351073/71‑1 (MQ=255) cGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAACAACATTAACGCGGt < 1:4842217/71‑1 (MQ=255) | CAGTACGTCTGAAACGCTGGCGGCAACGCCAAAGGCAGTAAAATCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCAGAACGGCGCTGATATACCCGATAAGGGATGCTTCCTGAACAACATTAACGCGGT > AP009048/1432190‑1432327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |