| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1557684 = | 54 (0.920) | 3 (0.060) | 3/94 | NT | 5.6% | intergenic (‑7/+95) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein |
| ? | AP009048 | 1557712 = | 52 (0.960) | intergenic (‑35/+67) | sra/bdm | 30S ribosomal subunit protein S22/biofilm‑dependent modulation protein | |||||
CAAGAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTT > AP009048/1557644‑1557780 | caAGAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGacaa > 1:3297929/1‑71 (MQ=255)caAGAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGacaa > 1:4097999/1‑71 (MQ=255) gAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACAt > 1:974804/1‑71 (MQ=255) gAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACAt > 1:1639455/1‑71 (MQ=255) tatGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCg < 1:4371205/70‑1 (MQ=255) tatGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGc < 1:1265786/71‑1 (MQ=255) tatGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGc < 1:4634981/71‑1 (MQ=255) tGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCg < 1:2104551/71‑1 (MQ=255) tGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCg < 1:1427945/71‑1 (MQ=255) ccTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCg > 1:4555300/1‑69 (MQ=255) aCGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCgaaga < 1:5334039/69‑1 (MQ=255) aCGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCgaaga < 1:570465/69‑1 (MQ=255) aCGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCgaaga < 1:2733274/69‑1 (MQ=255) gTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAacac < 1:3164569/71‑1 (MQ=255) cGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGt < 1:523812/70‑1 (MQ=255) gATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGc > 1:1378093/1‑71 (MQ=255) gATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGc < 1:3562923/71‑1 (MQ=255) gATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGc > 1:3033322/1‑71 (MQ=255) aTTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCt < 1:610472/71‑1 (MQ=255) aTTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCt < 1:2630757/71‑1 (MQ=255) aTTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCt < 1:3223929/71‑1 (MQ=255) aTTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGCACAACATCGCCg < 1:4613011/52‑1 (MQ=255) ttCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTa > 1:4449910/1‑52 (MQ=255) ttCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTa > 1:1660288/1‑70 (MQ=255) ttCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTa > 1:2937210/1‑70 (MQ=255) tCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGacaa > 1:1364412/1‑41 (MQ=255) tCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCg > 1:2190650/1‑49 (MQ=255) tCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAg > 1:1251418/1‑52 (MQ=255) tCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCgaa > 1:252610/1‑56 (MQ=255) cATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTaaa > 1:4400919/1‑70 (MQ=255) ttAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGc < 1:4824152/48‑1 (MQ=255) ttAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAAGACGTGCTAAAcccc > 1:4237748/1‑70 (MQ=255) tAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCt > 1:2043842/1‑70 (MQ=255) aaCTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTa > 1:5248773/1‑70 (MQ=255) TCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTaaa > 1:1351769‑M1/1‑61 (MQ=255) ccttaaaactagctacaggattgaggaCAACATCg > 1:2964734‑M2/28‑35 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCg > 1:2072488‑M1/1‑42 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAAtt > 1:5095792‑M1/1‑69 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAAtt > 1:4232168‑M1/1‑69 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAAtt > 1:3470540‑M1/1‑69 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAAtt > 1:3403448‑M1/1‑69 (MQ=255) CTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTa > 1:3191358‑M1/1‑70 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCgaaga > 1:659062‑M1/1‑45 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGaaa > 1:2053037‑M1/1‑47 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGaaa > 1:1333662‑M1/1‑47 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAac > 1:4220109‑M1/1‑48 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACTTGc > 1:1271608‑M1/1‑54 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGc > 1:4550361‑M1/1‑54 (MQ=255) TCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGc > 1:1207450‑M1/1‑54 (MQ=255) cAATCCTGTAGCTAGTTTTAAGGTCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGt > 1:3183091/1‑71 (MQ=255) cAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGaaa > 1:3460433/1‑46 (MQ=255) cAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGt > 1:234205/1‑71 (MQ=255) cAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGt > 1:5104571/1‑71 (MQ=255) cAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGt > 1:3237999/1‑71 (MQ=255) aaaactagctacaggattgaggaCAACATCGCCGTAGCGAAGAAACACGTg > 1:3211300‑M2/24‑51 (MQ=255) aaTCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAAt > 1:2572717/1‑65 (MQ=255) aaTCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGtt > 1:2466891/1‑71 (MQ=255) aaTCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGtt > 1:4853861/1‑71 (MQ=255) aTCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTg > 1:3439378/1‑71 (MQ=255) tCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGc > 1:4687607/1‑71 (MQ=255) actagctacaggattgaggaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGcc < 1:3124550‑M2/51‑1 (MQ=255) cTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCg < 1:878733/71‑1 (MQ=255) cTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCg < 1:1494308/71‑1 (MQ=255) tAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTa < 1:1718001/60‑1 (MQ=255) tAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGa < 1:282421/69‑1 (MQ=255) tAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGAt > 1:5215626/1‑70 (MQ=255) aGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATc > 1:1467779/1‑70 (MQ=255) gCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATc > 1:2078480/1‑69 (MQ=255) gCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATc > 1:1187097/1‑69 (MQ=255) gCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCa < 1:2288080/70‑1 (MQ=255) gTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCa > 1:3408510/1‑70 (MQ=255) gTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCAt < 1:1611222/71‑1 (MQ=255) ttttAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCa > 1:3321236/1‑69 (MQ=255) aaGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGc > 1:2998317/1‑64 (MQ=255) ggaCAACATCGCCTTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCt < 1:4256869‑M2/68‑1 (MQ=255) ggaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCt < 1:865607‑M2/68‑1 (MQ=255) gaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAgg < 1:863224‑M2/46‑1 (MQ=255) gaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCtt < 1:2209194‑M2/69‑1 (MQ=255) gaCAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGAATAGCACCtt < 1:3581122‑M2/69‑1 (MQ=255) caacaTCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAg > 1:581571/1‑63 (MQ=255) | CAAGAATATGACGTGCCTGACGGTTCGATTTCATTTTAACTCCTCAATCCTGTAGCTAGTTTTAAGGACAACATCGCCGTAGCGAAGAAACACGTGCTAAACCCCTAAATTAGGTTGCCGATCAAGCATAGCACCTT > AP009048/1557644‑1557780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |