| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1720804 | 47 (0.800) | 4 (0.080) | 3/88 | NT | 8.6% | coding (513/1110 nt) | ydhH | conserved hypothetical protein |
| ? | AP009048 | = 1720808 | 45 (0.890) | coding (509/1110 nt) | ydhH | conserved hypothetical protein | |||||
CATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGTACCAG > AP009048/1720738‑1720878 | cATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATgc > 1:2665248/1‑71 (MQ=255) aTGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCc < 1:5358880‑M2/71‑2 (MQ=255) tGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCcg < 1:4717246‑M2/71‑3 (MQ=255) tACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCcgcc < 1:5324313‑M2/70‑5 (MQ=255) aGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATCCcgccaa > 1:1025395‑M2/1‑62 (MQ=255) ggACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAata > 1:4477562/1‑69 (MQ=255) ggTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTg > 1:252950/1‑67 (MQ=255) ggTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCa < 1:3882701/71‑1 (MQ=255) ggTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCa < 1:4524361/71‑1 (MQ=255) gTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCAc > 1:4636572/1‑71 (MQ=255) gTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCAc > 1:336335/1‑71 (MQ=255) aTCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTg > 1:5026219/1‑64 (MQ=255) gTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATtc < 1:1753945/71‑1 (MQ=255) gTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATtc < 1:3510457/71‑1 (MQ=255) gTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATtc > 1:4060833/1‑71 (MQ=255) caGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAatat < 1:207197/57‑1 (MQ=255) gCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATtcgtc > 1:3140270/1‑71 (MQ=255) ccccAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCAt > 1:3528543/1‑64 (MQ=255) ccAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTc > 1:2457458/1‑71 (MQ=255) aaCCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCgg > 1:1339583/1‑71 (MQ=255) aaCCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCgg < 1:4085375/71‑1 (MQ=255) ccGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGtt < 1:4247594/71‑1 (MQ=255) ccGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGtt > 1:2987980/1‑71 (MQ=255) ggCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTgg < 1:4041231/71‑1 (MQ=255) cccAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAg > 1:1098133/1‑71 (MQ=255) cAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:990010/1‑70 (MQ=255) cAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:1290956/1‑70 (MQ=255) aGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:398695/1‑69 (MQ=255) aGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:4257751/1‑69 (MQ=255) aGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:4271203/1‑69 (MQ=255) aGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc > 1:1156337/1‑69 (MQ=255) aGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCca < 1:1059961/71‑1 (MQ=255) ggAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAg > 1:3783040/1‑41 (MQ=255) ggAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcag > 1:2724600/1‑71 (MQ=255) gAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcag > 1:4224878/1‑70 (MQ=255) aaTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcag > 1:1691845/1‑69 (MQ=255) aaTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTCGGTGAGCcagca < 1:4406049/71‑1 (MQ=255) aTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCgg < 1:728023/55‑1 (MQ=255) aTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCgg < 1:5184600/55‑1 (MQ=255) aTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcagca > 1:273326/1‑70 (MQ=255) aTGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcagca < 1:2528040/70‑1 (MQ=255) aGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAgcg > 1:5363883/1‑70 (MQ=255) aGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAgcg > 1:1954906/1‑70 (MQ=255) aGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAgcg > 1:402304/1‑70 (MQ=255) aGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCat > 1:1378052/1‑70 (MQ=255) tGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGt < 1:1739037/53‑1 (MQ=255) aCAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGt > 1:5037864/1‑46 (MQ=255) aCAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGt > 1:1434902/1‑46 (MQ=255) aGATTGGCGATGCcgccaatctgtcactgctcattcctgggcagccggttgggggctacgataccggtcct < 1:4200854‑M2/71‑59 (MQ=255) aGATTGGCGATGCcgccaatctgtcactgctcattcctgggcagccggttgggggctacgataccggtcct < 1:4542747‑M2/71‑59 (MQ=255) aTTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCt > 1:412329/1‑38 (MQ=255) aTTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCcagca > 1:107114/1‑56 (MQ=255) ttGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACg > 1:1550448/1‑70 (MQ=255) ttGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGc < 1:4411561/71‑1 (MQ=255) tGGCGATGCcgccaatctgtcactgctcattcctg > 1:2170225‑M2/1‑9 (MQ=255) gCGATGCcgccaatctgtcactgctcattcctggg < 1:485885‑M2/35‑29 (MQ=255) cGATGCCTCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGt < 1:2878561/71‑1 (MQ=255) cGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGt < 1:2824337/71‑1 (MQ=255) gATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGTa > 1:4899449/1‑71 (MQ=255) gATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGTa > 1:5043305/1‑71 (MQ=255) gccgccAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGc < 1:2467056/42‑1 (MQ=255) ccgccAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGTACCAg > 1:1406711/1‑71 (MQ=255) ccgccAATATTGAGCACCATTCGGCGCTCGGTTGGGTGAGCCAGCAGCGCatga < 1:4915408/54‑1 (MQ=255) | CATGTTACCAGGACCGGTATCGTAGCCCCCAACCGGCTGCCCAGGAATGAGCAGTGACAGATTGGCGATGCCGCCAATATTGAGCACCATTCGTCGCTCGGTTGGGTGAGCCAGCAGCGCATGATGGAACGCAGGTACCAG > AP009048/1720738‑1720878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |