| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2033398 | 44 (0.750) | 3 (0.060) | 3/92 | NT | 7.2% | coding (1057/1419 nt) | dcm | DNA cytosine methylase |
| ? | AP009048 | = 2033414 | 38 (0.720) | coding (1041/1419 nt) | dcm | DNA cytosine methylase | |||||
CATCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCCACAGCACCGGCGT > AP009048/2033344‑2033482 | cATCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATaa > 1:1785953/1‑71 (MQ=255) aTCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAc < 1:4875977‑M2/71‑2 (MQ=255) aTCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAc < 1:2277160‑M2/71‑2 (MQ=255) aTCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAc < 1:2283295‑M2/71‑2 (MQ=255) cTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAcc < 1:2645015‑M2/70‑3 (MQ=255) tGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAccg > 1:263484‑M2/1‑65 (MQ=255) gTAATAACGCGCAGACAGCTTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAccg > 1:4090979‑M2/1‑64 (MQ=255) gTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGc > 1:1212567/1‑71 (MQ=255) taaCGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGt > 1:3695268/1‑70 (MQ=255) aCGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTa < 1:4168105/70‑1 (MQ=255) cgcgCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTAcc < 1:4226135/71‑1 (MQ=255) gcgcAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTa > 1:3485494/1‑68 (MQ=255) gcAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACcgcg > 1:667192/1‑71 (MQ=255) cAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACcgcgc < 1:4047234/71‑1 (MQ=255) gACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACcgcgcg > 1:2690089/1‑70 (MQ=255) cAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCt < 1:4994625/71‑1 (MQ=255) cGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGAt > 1:3194368/1‑71 (MQ=255) tACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTa < 1:439208/56‑1 (MQ=255) aCGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAAccgaa > 1:2134548‑M2/1‑43 (MQ=255) cgcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTAcc > 1:2882733/1‑56 (MQ=255) gcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGcc < 1:1804185/49‑1 (MQ=255) gcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCt < 1:3609582/63‑1 (MQ=255) gcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGTTGtttt < 1:3945543/71‑1 (MQ=255) gcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGtttt < 1:2153250/71‑1 (MQ=255) gcgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGtttt < 1:1463279/71‑1 (MQ=255) cgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGttttt < 1:3595254/71‑1 (MQ=255) cgTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGttttt < 1:1053153/71‑1 (MQ=255) tGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCg < 1:4146290/47‑1 (MQ=255) gACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTg > 1:3101301/1‑60 (MQ=255) gACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGtttttt > 1:2747786/1‑69 (MQ=255) aCGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGcc > 1:2359413/1‑44 (MQ=255) aCGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACcgc > 1:3420456/1‑52 (MQ=255) gCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGttt > 1:4767319/1‑63 (MQ=255) tttGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACcg > 1:1018180/1‑47 (MQ=255) tttGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCatat > 1:934599/1‑71 (MQ=255) tttGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCata < 1:4700116/70‑1 (MQ=255) tGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATc > 1:4533892/1‑70 (MQ=255) tGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATc < 1:4275740/70‑1 (MQ=255) gCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCatat > 1:173197/1‑68 (MQ=255) gCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGa > 1:3863248/1‑71 (MQ=255) gATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATag < 1:1086540/71‑1 (MQ=255) ttCGGATAAACCATTCCATAAccgaacaatccgcaaagcgtcacgcgtacgctgtctgcgcgttat > 1:2218021‑M2/1‑21 (MQ=255) ttCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGt < 1:2433370/70‑1 (MQ=255) cGGATAAACCATTCCATAAccgaacaatccgcaaagcgtcacgcgt < 1:4388668‑M2/46‑28 (MQ=255) cGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGttt > 1:4485172/1‑48 (MQ=255) ggATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACt < 1:5068581/70‑1 (MQ=255) gATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATag > 1:2101360/1‑62 (MQ=255) gATAAAACATTCCATAAccgaacaatccgcaaagcgtcacgcgtacgctgtctgcgcgttattacaaagat < 1:685635‑M2/71‑55 (MQ=255) aaCCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCcaca < 1:4751859/71‑1 (MQ=255) ttCCATAACCGAAGCCGTTGCCGCGCGCCTGATGttttt > 1:3491484/1‑39 (MQ=255) ccATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGa > 1:349369/1‑48 (MQ=255) ccATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGa > 1:4770501/1‑48 (MQ=255) ccATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCCACAGCACCgg > 1:3454860/1‑71 (MQ=255) ccAAAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCCACAGCACCg > 1:3726615/1‑70 (MQ=255) cATAACCGAAGCCGTTACCGCGCGCCTGATGtttttt > 1:4376828/1‑37 (MQ=255) aTAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGt < 1:311690/53‑1 (MQ=255) tAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCCACAGCACCGGCGt > 1:3550157/1‑71 (MQ=255) | CATCTTTGTAATAACGCGCAGACAGCGTACGCGTGACGCTTTGCGGATTGTTCGGATAAACCATTCCATAACCGAAGCCGTTACCGCGCGCCTGATGTTTTTTCGCATATCGATAGAGGTACTTCCACAGCACCGGCGT > AP009048/2033344‑2033482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |