| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2273890 = | 47 (0.800) | 4 (0.070) | 3/94 | NT | 7.5% | intergenic (+11/‑170) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein |
| ? | AP009048 | 2273912 = | 55 (1.020) | intergenic (+33/‑148) | spr/rtn | predicted peptidase, outer membrane lipoprotein/conserved hypothetical protein | |||||
GTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT > AP009048/2273842‑2273981 | gTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCt < 1:1166604/71‑1 (MQ=255)gTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCt < 1:3704770/71‑1 (MQ=255) aCAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGa > 1:2814478/1‑70 (MQ=255) aCGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAg < 1:175858/71‑1 (MQ=255) gAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGt > 1:2134965/1‑70 (MQ=255) gCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:4260213/68‑1 (MQ=255) aCGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGAc > 1:505853/1‑61 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTg > 1:2353531/1‑69 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTg < 1:4892911/69‑1 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGaa < 1:3009334/71‑1 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa > 1:547963/1‑70 (MQ=255) gCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGa > 1:3378442/1‑70 (MQ=255) ccGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTg > 1:4115429/1‑68 (MQ=255) tgcctaagcagtgctttcagttaactcgtttGGATGCAATCCCTTGGCTATCCTGACGAg < 1:1944747‑M1/29‑1 (MQ=255) tgcctaagcagtgctttcagttaactcgtttGGATGCAATCCCTTGGCTATCCTGACGAg < 1:383264‑M1/29‑1 (MQ=255) ggTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa > 1:3627812/1‑71 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCtt < 1:4102956/70‑1 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCtt < 1:1993083/70‑1 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCtt < 1:285796/70‑1 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTa < 1:970368/71‑1 (MQ=255) aGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTa < 1:618327/71‑1 (MQ=255) gCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCtt < 1:5114696/69‑1 (MQ=255) ccGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAgg > 1:1991314/1‑71 (MQ=255) cGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGaaa > 1:1358116/1‑58 (MQ=255) cGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGaaa > 1:4845804/1‑58 (MQ=255) gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTg > 1:5041885/1‑42 (MQ=255) gCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAgg > 1:1658157/1‑69 (MQ=255) taataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGtt < 1:217651/44‑1 (MQ=255) taataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt > 1:4837779/1‑71 (MQ=255) taataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt > 1:1666869/1‑71 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGa < 1:5319938/40‑1 (MQ=255) aataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt > 1:2817817/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGATGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:2512226/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCa > 1:4600563/1‑53 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:4710512/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:3027676/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt > 1:2154175/1‑71 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCttt < 1:3803554/71‑1 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt < 1:4084733/70‑1 (MQ=255) ataaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt < 1:3380745/69‑1 (MQ=255) taaACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtttt > 1:2439944/1‑71 (MQ=255) aaaCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTa > 1:808312/1‑58 (MQ=255) aaCCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAgg > 1:640716/1‑59 (MQ=255) ctcgtcaggatagccaagggattgcatccAAACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:383264‑M2/31‑1 (MQ=255) ctcgtcaggatagccaagggattgcatccAAACGAGTTAACTGAAAGCACTGCTTAGGCa < 1:1944747‑M2/31‑1 (MQ=255) cGTTTGGATGCAATCCCTTGGCTATCCTGTGGAGTTAACTGAATGCACTGCTTAGGCAGt < 1:3980597/60‑1 (MQ=255) cGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt > 1:790953/1‑71 (MQ=255) cGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt > 1:599491/1‑71 (MQ=255) tttGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAgg < 1:3214388/54‑1 (MQ=255) tGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGc > 1:3556829/1‑42 (MQ=255) tGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttca > 1:1582171/1‑71 (MQ=255) tGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTttca > 1:2951719/1‑71 (MQ=255) ggatagccaagggattgcatccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCt < 1:4816680‑M2/36‑1 (MQ=255) GGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCt > 1:4560021‑M1/1‑47 (MQ=255) gatagccaagggattgcatccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtttt < 1:3908029‑M2/39‑1 (MQ=255) GATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtttttt > 1:4476930‑M1/1‑62 (MQ=255) gCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 1:4815442/1‑71 (MQ=255) cAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat < 1:1603443/70‑1 (MQ=255) cAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 1:2078866/1‑70 (MQ=255) aaTCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTtcattcat > 1:2247325/1‑69 (MQ=255) tCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATtcatca > 1:1473183/1‑69 (MQ=255) cccTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCCTAAGCAGTGCt < 1:2607464/49‑1 (MQ=37) ccTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt < 1:5161201/49‑1 (MQ=255) ccTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtttt > 1:5008180/1‑58 (MQ=255) ccTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCagag > 1:246967/1‑70 (MQ=255) cTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt < 1:4443198/48‑1 (MQ=255) cTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGaa < 1:1482040/71‑1 (MQ=255) ttGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTAATTCATCAGAGaa > 1:4030240/1‑70 (MQ=255) gCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCtt < 1:4506044/44‑1 (MQ=255) tccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGtt < 1:2763203‑M2/44‑1 (MQ=255) tccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGt > 1:1738841‑M2/4‑71 (MQ=255) tccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGt > 1:627018‑M2/4‑71 (MQ=255) ccTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGtt > 1:3580068‑M2/3‑71 (MQ=255) cTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAatgatg > 1:3708898‑M2/2‑68 (MQ=255) cTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGttt < 1:3759647‑M2/70‑1 (MQ=255) cTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGttt > 1:2504388‑M2/2‑71 (MQ=255) | GTTACAACGAAGCACGCCGGGTTCTCAGCCGCAGCTAATAAACCGTTTGGATGCAATCCCTTGGCTATCCTGACGAGTTAACTGAAAGCACTGCTTAGGCAGTGCTTTTTTGTTTTCATTCATCAGAGAAAATGATGTTT > AP009048/2273842‑2273981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |