| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2878891 | 35 (0.600) | 3 (0.060) | 3/92 | NT | 7.4% | coding (153/600 nt) | ygcH | hypothetical protein |
| ? | AP009048 | = 2878907 | 44 (0.830) | coding (137/600 nt) | ygcH | hypothetical protein | |||||
GACTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGAAATAAATGCCATAA > AP009048/2878840‑2878977 | gACTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATGAAACATGACAGCCTTCTGGTGtgt < 1:4616837‑M2/71‑4 (MQ=255) aCTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgt > 1:3394906‑M2/1‑67 (MQ=255) aCTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgt > 1:1682628‑M2/1‑67 (MQ=255) aCTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgt > 1:4592371‑M2/1‑67 (MQ=255) aaCGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgt > 1:5034375‑M2/1‑59 (MQ=255) aaCGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtg < 1:4657227‑M2/61‑3 (MQ=255) aCGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTtctc < 1:4639591/71‑1 (MQ=255) aCGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTtct > 1:2991712/1‑70 (MQ=255) ggCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgttt > 1:4087315‑M2/1‑56 (MQ=255) gCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGtgt > 1:4062017‑M2/1‑55 (MQ=255) aaGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACa > 1:2239087/2‑71 (MQ=255) ttGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCaa < 1:3699097/66‑1 (MQ=255) ttGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACAt < 1:2014235/69‑1 (MQ=255) tGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGa > 1:3254580/1‑70 (MQ=255) gAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGgtg > 1:806215/1‑49 (MQ=255) aaaCAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTtc < 1:2556404/59‑1 (MQ=255) aaaCAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGaaa < 1:129990/70‑1 (MQ=255) cAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAg > 1:5163344/1‑70 (MQ=255) cAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGa < 1:4251288/71‑1 (MQ=255) aGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGa > 1:2756813/1‑70 (MQ=255) ggCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGaaa < 1:1935546/71‑1 (MQ=255) cATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAAt < 1:261730/71‑1 (MQ=255) cATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAAt < 1:4856511/71‑1 (MQ=255) cATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAAt < 1:539909/71‑1 (MQ=255) aTTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACAtt < 1:4324666/59‑2 (MQ=255) ttGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGaa > 1:2817106/1‑59 (MQ=255) tGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCAc > 1:2352574/1‑70 (MQ=255) tGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCAc < 1:4154031/70‑1 (MQ=255) gcgcTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGaaa < 1:3129228/64‑1 (MQ=255) gcTGACTGCAATAAAACATGACAGCCTTCTGGTGt < 1:1631291‑M2/35‑2 (MQ=255) tGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCtt > 1:1475368/1‑42 (MQ=255) aCTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAgcagca < 1:372657/71‑1 (MQ=255) cAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCg > 1:5235349/1‑71 (MQ=255) cAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCg < 1:4714066/71‑1 (MQ=255) tAAAACATGACAGCCTTCTGGTGtgttttattgcagtcagcgcaaatgcctgtttcaactgccgttgcga < 1:471732‑M2/70‑48 (MQ=255) tAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACTTGAAAAAg < 1:3130443/48‑1 (MQ=255) tAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCa > 1:2109107/1‑55 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACa > 1:1720505/1‑38 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGaa > 1:76680/1‑48 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGaa > 1:2415384/1‑48 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATcc > 1:2667608/1‑65 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTg < 1:3473862/71‑1 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTg > 1:1985909/1‑71 (MQ=255) aaaCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTg > 1:4275168/1‑71 (MQ=255) aaCATGACAGCCTTCTGGTGtgttttattgcagtcagcgcaaatgcctgtttcaactgcc > 1:1514681‑M2/1‑20 (MQ=255) aCATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGtt > 1:2901484/1‑71 (MQ=255) gACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCAc > 1:2881230/1‑48 (MQ=255) gACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACTAGCAGCATCCGGTCTGTTTgg > 1:2732391/1‑70 (MQ=255) aCAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAAt > 1:3516752/1‑44 (MQ=255) cAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaa > 1:4336827/1‑71 (MQ=255) aGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaat < 1:3058548/71‑1 (MQ=255) gCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaata < 1:3287271/71‑1 (MQ=255) gCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaa > 1:630206/1‑69 (MQ=255) ccTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaataa < 1:306811/71‑1 (MQ=255) ccTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaataa < 1:607058/71‑1 (MQ=255) ccTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGaaata > 1:1842486/1‑70 (MQ=255) cTTCTGGTGtgttttattgcagtcagcgcaaatgcctgtttcaactgccgttgcgacagtcattaaaact < 1:3592024‑M2/70‑62 (MQ=255) cTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGagcagc < 1:380654/49‑1 (MQ=255) gtgtgtTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGAAATAAATGCCa > 1:5256014/1‑70 (MQ=255) gtgtTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGAAATAAATGCCATaa > 1:4713509/1‑71 (MQ=255) | GACTGTCGCAACGGCAGTTGAAACAGGCATTTGCGCTGACTGCAATAAAACATGACAGCCTTCTGGTGTGTTTCGCTTCTCAACATGAAAAAGAAAATCACGAGCAGCATCCGGTCTGTTTGGAAATAAATGCCATAA > AP009048/2878840‑2878977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |