| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2926734 | 48 (0.820) | 4 (0.080) | 4/88 | NT | 8.5% | intergenic (+406/‑151) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | = 2926743 | 45 (0.890) | intergenic (+415/‑142) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
GGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATT > AP009048/2926675‑2926812 | gggATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtg < 1:4418972‑M2/71‑3 (MQ=255)gggATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtg < 1:1524863‑M2/71‑3 (MQ=255)gggATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGt > 1:1159183‑M2/1‑69 (MQ=255) ggATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtgt > 1:3632423‑M2/1‑68 (MQ=255) ggATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtg > 1:4886671‑M2/1‑68 (MQ=255) aTAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATATCTTGTGtgtat > 1:2123846‑M2/1‑66 (MQ=255) tAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtttg < 1:3610945/65‑1 (MQ=255) tAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg < 1:3316279/65‑1 (MQ=255) tAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtgtatc < 1:1348141‑M2/71‑7 (MQ=255) aaTCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtgtatct < 1:5363531‑M2/71‑8 (MQ=255) atctatctTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtgt < 1:1222617‑M2/66‑4 (MQ=255) atctatctTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCtt > 1:1637240/1‑71 (MQ=255) tctTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGc > 1:5175239/1‑71 (MQ=255) tctTCCAAGTAGATTATTGTATTTGAAATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGc > 1:5175240/1‑71 (MQ=255) ctTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGcc > 1:537178/1‑71 (MQ=255) ttCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGtgtatct < 1:4691013‑M2/63‑8 (MQ=255) ccAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCt < 1:926509/70‑1 (MQ=255) ccAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCt > 1:1551218/1‑70 (MQ=255) ccAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCt > 1:1291088/1‑70 (MQ=255) cAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTc > 1:85655/1‑70 (MQ=255) gTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat > 1:2648888/1‑71 (MQ=255) gTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAat > 1:3455335/1‑71 (MQ=255) tAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtg > 1:541795/1‑49 (MQ=255) tAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 1:4893496/71‑1 (MQ=255) tAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatt < 1:3830219/71‑1 (MQ=255) gATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattat < 1:1299658/71‑1 (MQ=255) attGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg > 1:5083148/1‑71 (MQ=255) attGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg > 1:2991837/1‑71 (MQ=255) attGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg > 1:5206530/1‑71 (MQ=255) ttGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcgg > 1:1293093/1‑71 (MQ=255) atGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcg > 1:4782430/2‑70 (MQ=255) tATTTGAGATCAAGATCACTGATAGATACATAACTTGTGGGTATCTTTCCGCCCTCAAATTATTAcggcg < 1:186482/70‑1 (MQ=255) tttGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCtt < 1:3796021/45‑1 (MQ=255) tttGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGt > 1:4079903/1‑70 (MQ=255) tGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcgg < 1:2319942/64‑1 (MQ=255) tGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTaaa > 1:1549742/1‑71 (MQ=255) tGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTaaa > 1:2914029/1‑71 (MQ=255) tGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTaa < 1:1751816/70‑1 (MQ=255) gagaTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaa < 1:690010/53‑1 (MQ=255) gagaTCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCaa < 1:4672640/53‑1 (MQ=255) agatcaagatcaCTGATAGATACATAACTTGTGTGTATCTTTTCGCCCTCAAATTATTACGGCGGTAAAt < 1:1591264/70‑1 (MQ=255) gatcaagatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGa < 1:4047824/71‑1 (MQ=255) tcaagatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAattatt < 1:2989206/55‑1 (MQ=255) tcaagatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGAtt < 1:93034/71‑1 (MQ=255) caagatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGa > 1:1041810/1‑68 (MQ=255) aagatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGAtt > 1:2815769/1‑69 (MQ=255) gatcaCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGc > 1:768210/1‑71 (MQ=255) caCTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGa > 1:1144518/1‑62 (MQ=255) cTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAatta > 1:4685360/1‑44 (MQ=255) ttatagataCATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAAt < 1:5123470/55‑1 (MQ=255) tGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcgg < 1:3743908/49‑1 (MQ=255) tGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGc > 1:1053427/1‑71 (MQ=255) atagataCATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAcggcgg > 1:2144884/1‑50 (MQ=255) atagataCATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGcc > 1:4976708/1‑70 (MQ=255) agataCATAACTTGTGtgtatctatcagtgatcttgatctcaaatacaataatctacttgg > 1:972168‑M2/1‑16 (MQ=255) agataCATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTa < 1:1564286/58‑1 (MQ=255) gataCATAACTTGTGtgtatctatcagtgatcttgatctc > 1:4974322‑M2/1‑15 (MQ=255) ataCATAACTTGTGtgtatctatcagtgatcttgatctcaaatacaataatctac > 1:1843028‑M2/1‑14 (MQ=255) cATAACTTGTGTGTATCTTTCCGCCCTCAAAttatta > 1:3649292/1‑37 (MQ=255) aTAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGa > 1:5259007/1‑68 (MQ=255) aaCTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGAt > 1:2090352/1‑71 (MQ=255) aCTTGTGtgtatctatcagtgatcttgatctcaaatacaataatctacttggaagatagattatcccaacg > 1:3240620‑M2/1‑7 (MQ=255) aCTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATc < 1:2353447/56‑1 (MQ=255) cTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGAttt > 1:815471/1‑71 (MQ=255) ttGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGAttt > 1:5016904/1‑70 (MQ=255) gtgtATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCAtt > 1:5012027/1‑70 (MQ=255) | GGGATAATCTATCTTCCAAGTAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGGCGGTAAATGATTAAGCCATCGCCGATAGACAGATTTCATT > AP009048/2926675‑2926812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |