| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2971656 = | 65 (1.110) | 4 (0.080) | 3/92 | NT | 6.3% | coding (863/1194 nt) | ygeD | predicted inner membrane protein |
| ? | AP009048 | 2971686 = | 61 (1.160) | coding (833/1194 nt) | ygeD | predicted inner membrane protein | |||||
AGGGAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGTGGG > AP009048/2971617‑2971756 | aGGGAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt < 1:2380283/71‑1 (MQ=255)aGGGAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt < 1:1797009/71‑1 (MQ=255)aGGGAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt < 1:4924972/71‑1 (MQ=255) gggAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGta < 1:2853348/71‑1 (MQ=255) gggAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGta < 1:2761741/71‑1 (MQ=255) gggAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt > 1:2944337/1‑70 (MQ=255) aaaaaaTCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGtaac > 1:5361709/1‑70 (MQ=255) aaTCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTaactaact < 1:5245556/71‑1 (MQ=255) aaTCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTaactaact < 1:2021922/71‑1 (MQ=255) cAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCg > 1:5227968/1‑71 (MQ=255) aGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCg < 1:624212/70‑1 (MQ=255) aGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGc < 1:3717762/71‑1 (MQ=255) aGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGc > 1:1380221/1‑71 (MQ=255) gTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCt < 1:332005/71‑1 (MQ=255) accacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGtaactaac < 1:5205278/60‑1 (MQ=255) accacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCg > 1:2297224/1‑70 (MQ=255) accacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCg > 1:1988783/1‑70 (MQ=255) aacacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt > 1:4750468/3‑53 (MQ=255) ccacGCCAATCAAAATCCCGTCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGc > 1:1281345/1‑64 (MQ=255) ccacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCa > 1:1012698/1‑71 (MQ=255) cacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCt < 1:1481278/64‑1 (MQ=255) cacGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCt > 1:4564256/1‑64 (MQ=255) cGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCa > 1:2872537/1‑68 (MQ=255) gCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCAc < 1:3345895/68‑1 (MQ=255) ccAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTgc > 1:4347829/1‑71 (MQ=255) ccAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTgc < 1:4072216/71‑1 (MQ=255) ccAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTgc > 1:4162612/1‑71 (MQ=255) aaTCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGcc < 1:1978611/61‑1 (MQ=255) aaTCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTgcgc > 1:331088/1‑71 (MQ=255) tCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGt < 1:3174309/43‑1 (MQ=255) cAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCaa > 1:1843557/1‑71 (MQ=255) cAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCaa > 1:5097152/1‑71 (MQ=255) cAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCaa > 1:5102954/1‑71 (MQ=255) aaaaTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAAc > 1:1531426/1‑71 (MQ=255) aaaaTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAAc > 1:3772424/1‑71 (MQ=255) aaaTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAAcc < 1:1175383/71‑1 (MQ=255) aaTCCCGGCTGGCATACAGCGTGACGCGGTTTCCAGCGTaactaact < 1:1783181/47‑1 (MQ=255) aaTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCa > 1:1444569/1‑71 (MQ=255) aTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCAc > 1:1769951/1‑71 (MQ=255) aTCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTG‑‑GCACCTGCGCCAACCACGa > 1:1182748/1‑71 (MQ=255) tCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACg < 1:4728098/71‑1 (MQ=255) ccGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTc < 1:265035/45‑1 (MQ=255) ccGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa > 1:2357301/1‑70 (MQ=255) ccGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa > 1:5003165/1‑70 (MQ=255) ccGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa < 1:1220016/70‑1 (MQ=255) ccGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGAt < 1:1364681/71‑1 (MQ=255) ggCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATAc > 1:4530229/1‑71 (MQ=255) gctggaaaccgtgtcacgctgtatgccagcGTAACTAACTTCGCTGcc > 1:4321385‑M2/31‑48 (MQ=255) gctggaaaccgtgtcacgctgtatgccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATAc > 1:3061685‑M2/31‑70 (MQ=255) GCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGcc > 1:2589905‑M1/1‑59 (MQ=255) GCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATAc < 1:606586‑M1/70‑1 (MQ=255) ctggaaaccgtgtcacgctgtatgccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCa < 1:5168080‑M2/42‑1 (MQ=255) CTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATAcc < 1:1093681‑M1/70‑1 (MQ=255) tggaaaccgtgtcacgctgtatgccagcGTAACTAACTTCGCTGCCGCa < 1:4461234‑M2/21‑1 (MQ=255) TGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCaa < 1:784586‑M1/71‑1 (MQ=255) TGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCa < 1:672471‑M1/70‑1 (MQ=255) GCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCaa < 1:5091168‑M1/69‑1 (MQ=255) cATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCg > 1:2558774/1‑71 (MQ=255) aTACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa < 1:4740877/61‑1 (MQ=255) aTACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGc < 1:3429217/71‑1 (MQ=255) aTACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGc < 1:3749650/71‑1 (MQ=255) tACAGCGTGACTCGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAAt < 1:4755148/67‑1 (MQ=255) tACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCAc < 1:1707073/58‑1 (MQ=255) tACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAAt < 1:4406048/67‑1 (MQ=255) tACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGc < 1:920686/70‑1 (MQ=255) cAGCGTGACACGGTTTCGAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTAc > 1:1883478/1‑71 (MQ=255) cAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCa < 1:1684739/51‑1 (MQ=255) cAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa > 1:419006/1‑58 (MQ=255) cAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTAc > 1:2713547/1‑71 (MQ=255) cAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTAc > 1:5072452/1‑71 (MQ=255) aGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGa > 1:2708882/1‑57 (MQ=255) aGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTAc > 1:4791498/1‑70 (MQ=255) gTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATc > 1:320897/1‑71 (MQ=255) tGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGc < 1:3668258/36‑1 (MQ=255) tGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGAt > 1:2658218/1‑54 (MQ=255) tGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATcg > 1:1042445/1‑71 (MQ=255) acacGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATcgcg < 1:1821570/71‑1 (MQ=255) acacGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATcgcg < 1:3896829/71‑1 (MQ=255) acGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGtt < 1:615876/71‑1 (MQ=255) cGGTTTCCAGCGTAACTAACTTCGCTGCCTCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTg < 1:5189961/71‑1 (MQ=255) ggTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGtt > 1:215762/1‑69 (MQ=255) ggTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGtt > 1:4988724/1‑69 (MQ=255) ggTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACAATACCAATCGCTACCATCGCGTTga < 1:1276691/71‑1 (MQ=255) gTTTCCAGCGTAAGTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGtt > 1:3104622/1‑68 (MQ=255) gTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTgag < 1:5308362/71‑1 (MQ=255) tttCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTgaga < 1:618910/71‑1 (MQ=255) ttCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTgaga > 1:2974154/1‑70 (MQ=255) tCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGAt < 1:3869214/70‑1 (MQ=255) ccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTga < 1:155774‑M2/61‑1 (MQ=255) ccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATa < 1:3935562‑M2/65‑1 (MQ=255) ccagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAg > 1:3116829‑M2/6‑71 (MQ=255) cagcGTAACTAACTTCGCTGCCGCCCCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAgg > 1:5299172‑M2/5‑71 (MQ=255) cagcGTAACTAACTTCGCTGCCGCACCTGCGCCAAc < 1:341238‑M2/32‑1 (MQ=255) cagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCAc < 1:836097‑M2/35‑1 (MQ=255) cagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATcg < 1:1612677‑M2/55‑1 (MQ=255) cagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAgg > 1:233336‑M2/5‑71 (MQ=255) cagcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAgg < 1:4484497‑M2/67‑1 (MQ=255) agcGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGt < 1:2742177‑M2/68‑1 (MQ=255) gTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGTggg > 1:2659876/1‑71 (MQ=255) | AGGGAAAAAATCAGTACCACCACGCCAATCAAAATCCCGGCTGGCATACAGCGTGACACGGTTTCCAGCGTAACTAACTTCGCTGCCGCACCTGCGCCAACCACGATACCAATCGCTACCATCGCGTTGAGATAGGTGGG > AP009048/2971617‑2971756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |