| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4143468 = | 46 (0.790) | 3 (0.060) | 3/90 | NT | 7.0% | intergenic (‑55/+71) | nirC/nirD | nitrite transporter/nitrite reductase, NAD(P)H‑binding, small subunit |
| ? | AP009048 | 4143500 = | 39 (0.750) | intergenic (‑87/+39) | nirC/nirD | nitrite transporter/nitrite reductase, NAD(P)H‑binding, small subunit | |||||
ATAAAAACAAAAAATAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGCACCACGCCGTCT > AP009048/4143432‑4143566 | aTAAAAACAAAAAATAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCAt > 1:2695006/1‑71 (MQ=255)aTAAAAACAAAAAATAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCAt > 1:4120972/1‑71 (MQ=255) aaaaaCAAAAAATAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATg > 1:4477257/1‑70 (MQ=255) aaaaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAgg > 1:1157791/1‑71 (MQ=255) aaaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAggg < 1:5373805/71‑1 (MQ=255) aaaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAggg < 1:3187919/71‑1 (MQ=255) aaaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAggg > 1:3508464/1‑71 (MQ=255) aaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCAt > 1:2959540/1‑60 (MQ=255) aaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAgggg < 1:3843416/71‑1 (MQ=255) aaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAggg > 1:16646/1‑70 (MQ=255) aaaTAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAggg > 1:4067767/1‑70 (MQ=255) aaaCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCa < 1:4948063/71‑1 (MQ=255) aaaCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCa > 1:3588501/1‑71 (MQ=255) aaCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCAt < 1:175235/71‑1 (MQ=255) aaCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCAt < 1:4794636/71‑1 (MQ=255) aCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCAtt < 1:4091099/71‑1 (MQ=255) aCAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCAtt < 1:3969726/71‑1 (MQ=255) cAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTg > 1:4604664/1‑71 (MQ=255) aaaGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTgcgc > 1:1641353/1‑71 (MQ=255) aaaGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTgcgc > 1:2769369/1‑71 (MQ=255) ttAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTccc > 1:524104/1‑71 (MQ=255) aaaaaaTGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCAttcc < 1:4218477/62‑3 (MQ=255) aaaaaaTGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTgc < 1:1150642/62‑1 (MQ=255) aaaaTGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAg > 1:2524567/1‑48 (MQ=255) aaTGTCCTGCAATATACCGAAGATTATTACAGGACCATGCaaaaa > 1:3846679/1‑45 (MQ=255) aaTGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGt > 1:26559/1‑67 (MQ=255) tGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAg < 1:4603730/44‑1 (MQ=255) tcctgtaataatcttcggtatattgcaggacCATGCAAAAAGGGGAGGCATTgc < 1:4074359‑M2/23‑1 (MQ=255) TCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACAt < 1:4999328‑M1/71‑1 (MQ=255) ctgtaataatcttcggtatattgcaggacCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACAtt < 1:1456221‑M2/41‑1 (MQ=255) tgtaataatcttcggtatattgcaggacCATGCAAAAAGGGGAGGCATTgc > 1:5272938‑M2/29‑51 (MQ=255) cAATATACCGAAGATTATTACAGGACCATGCAAAAAGTGGAGGCATTGCGCCTCCCGTTAAAACATTAAcc > 1:3680919/1‑71 (MQ=255) cAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTaa < 1:5139179/69‑1 (MQ=255) cAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAAcc > 1:2482679/1‑71 (MQ=255) atatACCGAAGATTTTTACAGGACCATGCAAAAAg > 1:4064099/1‑35 (MQ=255) tataCCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGc < 1:986017/41‑1 (MQ=255) ataCCGAAGATTATTACAGGACCATGCAAAAAgggg > 1:1147697/1‑36 (MQ=255) taCCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCa < 1:4504212/71‑1 (MQ=255) ccGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCt > 1:1767990/1‑46 (MQ=255) ccGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCt > 1:3004124/1‑46 (MQ=255) ccGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAg < 1:624586/70‑1 (MQ=255) cGAAGATTATTACAGGACCATGCAAAAAGGGGAgg < 1:3865515/35‑1 (MQ=255) gAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTaa > 1:2938460/1‑60 (MQ=255) gAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTaa > 1:2944491/1‑60 (MQ=255) aaGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTg > 1:2368329/1‑70 (MQ=255) aGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACAtt < 1:322464/56‑1 (MQ=255) ttattaCAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGcacca > 1:3088041/1‑71 (MQ=255) ttaCAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCgcgc < 1:5361269/58‑1 (MQ=255) aCAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACa > 1:986672/1‑46 (MQ=255) aggacCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTa > 1:1176735‑M2/6‑39 (MQ=255) aggacCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGcac < 1:1631338‑M2/57‑1 (MQ=255) aggacCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGCACCACGCCGTc > 1:3967798‑M2/6‑71 (MQ=255) gacCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGCACCACGCCGTCt < 1:4846284‑M2/67‑1 (MQ=255) cATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCgcgc < 1:1701541/49‑1 (MQ=255) | ATAAAAACAAAAAATAAAACAAAAAGTTTAAAAAATGTCCTGCAATATACCGAAGATTATTACAGGACCATGCAAAAAGGGGAGGCATTGCGCCTCCCGTTAAAACATTAACCGCGCAGCTGCACCACGCCGTCT > AP009048/4143432‑4143566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |