| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 3,685,100 | A→C | 100% | pseudogene (1022/1645 nt) | ilvG ← | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 3,685,100 | 0 | A | C | 100.0% | 292.0 / NA | 83 | pseudogene (1022/1645 nt) | ilvG | ECK3760:JW3740+JW3741:b4488; large subunit of acetolactate synthase II |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (31/52); total (31/52) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATGTTCATCACGCAGCTGCGCGCAGTGTTGCTGCCAGTCATTG‑‑ATTTAACGGCTGCTGTAATG > AP009048/3685033‑3685163 | cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:987894/70‑1 (MQ=255)cGATCTGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATg > 1:3986742/1‑71 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGtt < 1:4906449/66‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcatca < 1:5362943/71‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcatc < 1:4617821/70‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcat < 1:2056850/69‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcat < 1:874194/69‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcat < 1:94672/69‑1 (MQ=255) aCAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtca < 1:1530702/68‑1 (MQ=255) aGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtcat < 1:1103118/67‑1 (MQ=255) gttgttTTAACAACAACGGCGCGTAGTTAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGc < 1:4032802/71‑1 (MQ=255) tgttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg > 1:2621836/1‑71 (MQ=255) tgttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg > 1:2692674/1‑71 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:1849783/70‑1 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:917758/70‑1 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:2427090/70‑1 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:2526006/70‑1 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGc > 1:3370811/1‑71 (MQ=255) gttTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGc > 1:448603/1‑71 (MQ=255) ttttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGtt < 1:856032/59‑1 (MQ=255) ttttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:3234685/69‑1 (MQ=255) ttttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGc < 1:3667605/70‑1 (MQ=255) ttttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCt < 1:2532806/71‑1 (MQ=255) tttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCAt < 1:2101976/55‑1 (MQ=255) tttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATg > 1:1722473/1‑56 (MQ=255) ttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACg > 1:4215717/1‑64 (MQ=255) ttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGc < 1:4987667/65‑1 (MQ=255) ttAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGc > 1:3831822/1‑68 (MQ=255) aacaacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAAGGCCAGGCATGTtca < 1:2411824/57‑1 (MQ=255) aacaacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtc > 1:1393094/1‑56 (MQ=255) aacaacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTtc > 1:47590/1‑56 (MQ=255) caacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTgcgcgc < 1:1570520/71‑1 (MQ=255) aacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTgcgcg > 1:377311/1‑69 (MQ=255) aacaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTgc > 1:4955417/1‑66 (MQ=255) aacaacGGCGCGTAGATAGAGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCa < 1:3199388/71‑1 (MQ=255) acaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAg < 1:2631200/71‑1 (MQ=255) acaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAg < 1:3159843/71‑1 (MQ=255) acaacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAg < 1:1465537/71‑1 (MQ=255) caacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGt > 1:3654571/1‑49 (MQ=255) caacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgt < 1:3446907/71‑1 (MQ=255) caacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgt < 1:1031991/71‑1 (MQ=255) caacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgt > 1:302340/1‑71 (MQ=255) aacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCt > 1:5006434/1‑61 (MQ=255) aacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgtg > 1:3002842/1‑71 (MQ=255) aacGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgtg > 1:965906/1‑71 (MQ=255) acGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACTCCAGGCATGTTCATCACGCAGCTGCGCGCAgtgt < 1:2123025/71‑1 (MQ=255) cGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCAc > 1:2689555/1‑53 (MQ=255) cGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgtgta < 1:1008739/71‑2 (MQ=255) ggCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgtgtag < 1:1725460/71‑3 (MQ=255) gcgcGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACg < 1:3229733/52‑1 (MQ=255) gcgcGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTagc > 1:999801/1‑71 (MQ=255) cgTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTagctgc < 1:4455358/71‑1 (MQ=255) gTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCa < 1:3756663/60‑1 (MQ=255) gTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGcc < 1:2597491/71‑1 (MQ=255) gTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGcc < 1:3393029/71‑1 (MQ=255) aGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgt < 1:825747/60‑1 (MQ=255) aGATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAg > 1:3327/1‑71 (MQ=255) gATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGt > 1:3619595/1‑71 (MQ=255) gATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGt > 1:4741019/1‑71 (MQ=255) gATAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGt > 1:1874091/1‑71 (MQ=255) aTAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAg < 1:2043912/47‑1 (MQ=255) aTAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTagc > 1:2480797/1‑63 (MQ=255) aTAGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTc < 1:3844470/71‑1 (MQ=255) aGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAgt < 1:3635864/56‑1 (MQ=255) aGCGTCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCAt > 1:1261722/1‑71 (MQ=255) gTCACGGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑a < 1:4098037/71‑1 (MQ=255) gTCACCGGGATGGTCGTAACGCCAGGCATGTtcatc < 1:4541703/36‑1 (MQ=255) tCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑At < 1:4307184/71‑1 (MQ=255) tCACCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑At < 1:590963/71‑1 (MQ=255) aCCGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGAAGTGTAGCTGCCAGTCATTG‑‑Atat > 1:3528603/1‑69 (MQ=255) ccGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑Atatt > 1:4629584/1‑68 (MQ=255) ccGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑Atat > 1:861477/1‑68 (MQ=255) cGGGATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTgcgcgc < 1:3287957/45‑1 (MQ=255) ggATGGTCGTAACGCCAGGCATGTTCATCACGCAGCTgc < 1:1110204/39‑1 (MQ=255) tGGTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTG‑‑Ata > 1:2690255/1‑62 (MQ=39) ggTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTGATATTTAACGgc > 1:1447516/1‑71 (MQ=255) gTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGt < 1:4682769/53‑1 (MQ=38) gTCGTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTGATATTTAACGgct < 1:2456632/71‑1 (MQ=255) gTAACGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAg > 1:5002787/1‑49 (MQ=38) tAACGCCAGGCATGTTCATCACGCAGCTGCGAGCAGTGTAGCTGCCAGTCATTG‑‑Ata < 1:1934731/57‑2 (MQ=38) aaCGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTGATATTTAACGgctg < 1:3386181/67‑1 (MQ=255) aCGCCAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTGATATTTAACGGCTGCTGt < 1:395708/70‑1 (MQ=255) ccAGGCATGTTCATCACGCAGCTGCGCGCAGTGTAGCTGCCAGTCATTGATATTTAACGGCTGCTGTAATg < 1:422227/71‑1 (MQ=255) | CGATCCGACAGTTGTTTTAACAACAACGGCGCGTAGATAGCGTCACCGGGATGGTCGTAACGCCAGGAATGTTCATCACGCAGCTGCGCGCAGTGTTGCTGCCAGTCATTG‑‑ATTTAACGGCTGCTGTAATG > AP009048/3685033‑3685163 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |