New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	= 436833	53 (1.080)	79 (1.620)	40/100	NT	61.0%	coding (546/546 nt)	seqA	regulatory protein for replication initiation
	?	Exported	1803907 =	48 (0.980)					intergenic (+63/‑28)	ygaH/mprA	predicted inner membrane protein/DNA‑binding transcriptional regulator

ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/436765‑436833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  Exported/1803907‑1803976                                                                                                                                             ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:2150430/1‑71 ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:116234/1‑71   CGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                                    >  1:2480681/1‑71    GAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGC                                                                    <  1:2973935/70‑1      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:206530/71‑1      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:1533137/71‑1      ACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:151613/71‑1          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:719871/71‑1          ATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:891358/71‑1            CATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:868088/1‑71             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:408434/1‑70             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           <  1:1315005/70‑1             ATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                            <  1:723851/69‑1              TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:2363906/71‑1              TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATG                                                         <  1:3007459/71‑1              TGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          >  1:114896/1‑70                 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:2515213/67‑1                 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:1450291/67‑1                 AGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:2967659/67‑1                  GTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAAT                                                          <  1:2593898/66‑1                     GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                                  <  1:3038523/71‑1                     GATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCAT                                                  <  1:2296051/71‑1                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC                                               >  1:738223/1‑71                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACC                                               >  1:1227221/1‑71                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATT                                                             <  1:117695/57‑1                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA                                                               >  1:2332345/1‑55                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACG                                                                      >  1:2685474/1‑48                        GCAATTCCCGGCGGAATTGATTGAGAAGGTTTG‑GGAACTATCTAACGGCTGAAATT                                                             <  1:1870036/56‑1                          AATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCC                                              >  1:2747581/1‑70                           ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                            >  1:2633043/1‑55                           ATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTA                                                            >  1:2132266/1‑55                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTTACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:77192/69‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:1977196/1‑71                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1383513/69‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:897859/69‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:2477434/69‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1180395/69‑1                            TTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:836232/69‑1                             TCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAAT                                          >  1:1138379/1‑71                              CCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTC                                                    >  1:943386/1‑60                               CCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAA                                                           >  1:914704/1‑52                                CGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                       >  1:2183372/1‑71                                CGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGA                                       <  1:166708/71‑1                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGAT                                      <  1:1057989/71‑1                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCC                                              <  1:1879203/63‑1                                 GGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:656522/44‑1                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAG                                    >  1:112562/1‑71                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA                                                               >  1:2248185/1‑44                                   CGGAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAA                                                               >  1:732886/1‑44                                     tAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA                                            <  1:2786233/60‑1                                     GAATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAA                                            <  1:2621279/61‑1                                      AATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:641903/59‑1                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGT                                   <  1:3047703/68‑1                                       ATTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAAT                                          >  1:2632449/1‑61                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                               <  1:2549165/71‑1                                        TTGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGT                               <  1:1450656/71‑1                                         TGATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              >  1:2453800/1‑71                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:2239681/70‑1                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:2368563/1‑57                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1409690/55‑1                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:1114434/55‑1                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                        >  1:643293/1‑44                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGA                                                        >  1:1891355/1‑44                                          GATTGAGAAGGTTTGCGGAACTATCTAACGGCTGA                                                                 <  1:2374608/35‑1                                           ATTGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCA                                             <  1:947110/54‑1                                             TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:1067304/1‑54                                             TGAGAAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAA                                           >  1:936013/1‑54                                                 tAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                      >  1:1353697/2‑71                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                      >  1:1086335/1‑71                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCA                      >  1:780641/1‑71                                                 AAGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCC                       >  1:2864307/1‑70                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT                     <  1:1944888/71‑1                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT                     <  1:127155/71‑1                                                  AGGTTTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCAT                     <  1:856566/71‑1                                                   GGTTTGAGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATT                    <  1:1304171/71‑1                                                      TTGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA                 >  1:100448/1‑71                                                       TGCGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAA                 >  1:1780536/1‑70                                                         CGGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA               <  1:852480/70‑1                                                          GGAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACA               <  1:625694/69‑1                                                           GAACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTA                            >  1:2967805/1‑55                                                            AACTATCTAACGGCTGAAATTAATGAGGTCATACCCAAATG                                         <  1:462063/41‑1                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1659569/49‑1                                                               TATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTT                              <  1:1662985/49‑1                                                                ATCTAACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAA             >  1:675800/1‑65                                                                    AACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAAT    >  1:2247697/1‑70                                                                    AACGGCTGAAATTAATGAGGTCATACCCAAATGGATA                                     >  1:1470363/1‑37                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  <  1:183418/71‑1                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  <  1:43948/71‑1                                                                     ACGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  <  1:2017128/71‑1                                                                                                                                             ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/436765‑436833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGCTGAAATTAATGAGGTCATACCCAAATGGATAGTTCGTTTACGCCCATTGAACAAATGCTAAAATTT  >  Exported/1803907‑1803976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.