| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 2540584 | 51 (1.040) | 5 (0.110) | 3/90 | NT | 8.1% | coding (75/699 nt) | rfaY | lipopolysaccharide core biosynthesis protein |
| ? | Exported | = 2540601 | 68 (1.550) | coding (92/699 nt) | rfaY | lipopolysaccharide core biosynthesis protein | |||||
TTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGC > Exported/2540514‑2540654 | ttCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:2963187‑M1/71‑1 (MQ=255) cAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTaaa > 1:1134544/1‑71 (MQ=255) cAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTaa < 1:1048873/70‑1 (MQ=255) agaagaGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAAt < 1:1436791/71‑1 (MQ=255) gaagaGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATg < 1:12815/71‑1 (MQ=255) gagCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGAct > 1:692804/1‑71 (MQ=255) agCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGActt < 1:2959138/71‑1 (MQ=255) gCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGActtc > 1:2602052/1‑71 (MQ=255) gCAAGATCAAAGACTTGGTTGTGTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGActtc > 1:2347540/1‑71 (MQ=255) cAAGATCAAAGACTTGTTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATg < 1:272540/65‑1 (MQ=255) aGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTg > 1:931933/1‑71 (MQ=255) aTCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:322928‑M1/57‑1 (MQ=255) aTCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:1738618‑M1/57‑1 (MQ=255) gACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTAtaa > 1:1553824‑M2/1‑68 (MQ=255) gACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTA < 1:1630641‑M1/51‑1 (MQ=255) tGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTAtaata < 1:1384372‑M2/69‑6 (MQ=255) gttgttTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAtaagacaagaagtcattt < 1:945876‑M1/63‑19 (MQ=255) gttgttTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTtataatataa < 1:2001267/70‑1 (MQ=255) ttttACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTAtaata < 1:1872247‑M2/62‑6 (MQ=255) tttACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATatcat > 1:697591/1‑71 (MQ=255) tttACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATatca > 1:2009046/1‑70 (MQ=255) tACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATctcatc < 1:2154837/70‑1 (MQ=255) ccGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCaa < 1:2346838/70‑1 (MQ=255) cGATGAAAACAATTCAAAGTACCTCAATGTATTAtaagacaagaagtcatttaa < 1:379125‑M1/54‑21 (MQ=255) cGATGAAAACAATTCAAAGTACCTCAATGTATTAtaagacaagaagtcatttaa < 1:549064‑M1/54‑21 (MQ=255) aTGAAAACAATTCAAAGTACCTCAATGTATTAtaagacaagaagtcatttaata > 1:2880981‑M1/1‑32 (MQ=255) aTGAAAACAATTCAAAGTACCTCAATGTATTAtaagacaagaagtcatttaata > 1:862247‑M1/1‑32 (MQ=255) aTGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtt > 1:825838/1‑71 (MQ=255) aTGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtt < 1:2832458/71‑1 (MQ=255) aTGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtt > 1:371275/1‑71 (MQ=255) tGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttt < 1:910727/71‑1 (MQ=255) gAAAACAATTCAAAGTACCTCAATGTATTAAATGa > 1:779298/1‑35 (MQ=255) gAAAACAATTCAAAGTACCTCAATGTATTAAATGa > 1:2295165/1‑35 (MQ=255) gAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAatat > 1:2065342/1‑59 (MQ=255) aaaaCAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGt > 1:1637810/1‑42 (MQ=255) aaCAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATAtcatca > 1:2520763/1‑61 (MQ=255) aaCAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCg < 1:3006402/71‑1 (MQ=255) aaCAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCg < 1:832011/71‑1 (MQ=255) aaCAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCg > 1:1677965/1‑71 (MQ=255) gaaTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGtt > 1:2847408/2‑71 (MQ=255) aaTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTtataatata < 1:3056001/48‑1 (MQ=255) aaTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTAt > 1:647725‑M2/1‑41 (MQ=255) aaTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTc < 1:3045390/71‑1 (MQ=255) aaTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTc > 1:57521/1‑71 (MQ=255) aaTTCAAAGTACCTCAACGTATTAAATGACTTCTTGTCTTAt > 1:2775889‑M2/1‑41 (MQ=255) aTTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTc > 1:557597/1‑70 (MQ=255) ttCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAata < 1:2484029/50‑1 (MQ=255) tCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTtataatataa < 1:1216065/46‑1 (MQ=255) cAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt > 1:1550559/1‑62 (MQ=255) cAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt > 1:346167/1‑62 (MQ=255) cAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTAt > 1:281990/1‑70 (MQ=255) aaaGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTAtt < 1:2261631/70‑1 (MQ=255) aaaGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtg < 1:287205/71‑1 (MQ=255) aaGTACCTCAATGTATTAAATGACTTCTTGTCTtataatat > 1:2296012/1‑41 (MQ=255) aaGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt < 1:1959592/60‑1 (MQ=255) aaGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt < 1:1790530/60‑1 (MQ=255) aGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtgat < 1:1450699/71‑1 (MQ=255) aGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtgat < 1:3051208/71‑1 (MQ=255) aGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtgat < 1:1565690/71‑1 (MQ=255) tACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTAtt < 1:2413602/66‑1 (MQ=255) tACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtgatga < 1:1494869/71‑1 (MQ=255) aCCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt > 1:2962744/1‑56 (MQ=255) ccTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTc < 1:2827641/60‑1 (MQ=255) cTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtttt < 1:2779624/53‑1 (MQ=255) cTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtttt < 1:2778786/53‑1 (MQ=255) cAATGTATTAAATGACTTCTTGTCTTATAATATAAat < 1:1868041/37‑1 (MQ=255) cAATGTATTAAATGACTTCTTGTCTTATAATATAAat < 1:1871670/37‑1 (MQ=255) cAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACa > 1:619528/1‑70 (MQ=255) aaTGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACaa < 1:695273/70‑1 (MQ=255) tGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtttt < 1:609048/48‑1 (MQ=255) tGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGtttt < 1:643918/48‑1 (MQ=255) tGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTAtt < 1:2510907/58‑1 (MQ=255) tattataagacaagaagtcatttaatacattgaggtactttgaattgttttcatcggtaaaaacaacca < 1:1384372‑M1/69‑65 (MQ=255) tattataagacaagaagtcatttaatacattgaggtactttgaattgttttcatcggtaaaa < 1:1872247‑M1/62‑58 (MQ=255) tATTAAATGACTTCTTGTCTTAtaatacattgaggtactttgaattgttttcat > 1:2880981‑M2/1‑22 (MQ=255) tATTAAATGACTTCTTGTCTTAtaatacattgaggtactttgaattgttttcat > 1:862247‑M2/1‑22 (MQ=255) tATTAAATGACTTCTTGTCTTATTATATAAATATCATCAAGGTTTTTCGTTCTAt < 1:2422322/55‑1 (MQ=255) tATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGt < 1:1586440/70‑1 (MQ=255) aTTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGtt < 1:2394219/70‑1 (MQ=255) ttataagacaagaagtcatttaatacattgaggtactttgaattgttttcatcggtaaaaacaaccaagtc > 1:1553824‑M1/1‑3 (MQ=255) ttAAATGACTTCTTGTCTTAtaatacattgaggtactttgaattgttttcatcg < 1:549064‑M2/54‑35 (MQ=255) ttAAATGACTTCTTGTCTTAtaatacattgaggtactttgaattgttttcatcg < 1:379125‑M2/54‑35 (MQ=255) ttAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGttttt < 1:1379341/45‑1 (MQ=255) ttAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATtgatga < 1:2961594/59‑1 (MQ=255) ataagacaagaagtcatttaatacgttgaggtactttgaatt > 1:2775889‑M1/1‑1 (MQ=255) ataagacaagaagtcatttaatacattgaggtactttgaatt > 1:647725‑M1/1‑1 (MQ=255) aaaTGACTTCTTGTCTTAtaatacattgaggtactttgaattgttttcatcggtaaaaacaac < 1:945876‑M2/63‑46 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTc > 1:18162/1‑44 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATg > 1:675567/1‑70 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGc > 1:738547/1‑71 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGc > 1:2487672/1‑71 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGc > 1:1464512/1‑71 (MQ=255) aaaTGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGc > 1:1190429/1‑71 (MQ=255) | TTCAGAAGAGCAAGATCAAAGACTTGGTTGTTTTTACCGATGAAAACAATTCAAAGTACCTCAATGTATTAAATGACTTCTTGTCTTATAATATAAATATCATCAAGGTTTTTCGTTCTATTGATGATACAAAAGTTATGC > Exported/2540514‑2540654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |