Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BS168_reference_genome | 4,021,185:1 | +T | 5.8% | coding (122/330 nt) | yxiH ← | conserved protein of unknown function |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 4,021,185 | 1 | . | T | 5.8% | 228.6 / 11.2 | 69 | coding (122/330 nt) | yxiH | conserved protein of unknown function |
Reads supporting (aligned to +/- strand): ref base . (39/26); new base T (2/2); total (41/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
AAAACCTTTACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGTTATGCTC > BS168_reference_genome/4021047‑4021317 | aaaaCCTTTACCTTCGTCTCTTACGATTCGTAATAAACTAAGACATAGCCATCTGCACATTGTTGAAAGAGAAGAATATAACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGa < 5:83350/139‑1 (MQ=255) aaaaCCTTTACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGa < 2:224211/139‑1 (MQ=255) aaaaCCTTTACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGa < 5:186059/139‑1 (MQ=255) aaaaCCTTTACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGa < 2:47900/139‑1 (MQ=255) tACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAAt < 5:279832/138‑1 (MQ=255) tACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATg > 4:208710/1‑139 (MQ=255) ggCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTTTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATATA‑TTGTAATGGTGATa > 5:354821/1‑138 (MQ=255) ggCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac > 6:32470/1‑139 (MQ=255) ggCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac < 5:42789/139‑1 (MQ=255) ggCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac < 2:55379/139‑1 (MQ=255) ggCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac < 4:338896/139‑1 (MQ=255) gCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATacc < 6:307281/139‑1 (MQ=255) tACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCCCCtt > 5:371367/1‑139 (MQ=255) tACGATTCGTAAT‑AACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGATTTGTAATGTTGATACCACCtt > 3:30977/1‑139 (MQ=255) tACGATTCGTAAT‑AACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGATTTGTAATGGTGATACCACCtt > 3:36464/1‑139 (MQ=255) cGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTc < 6:188467/139‑1 (MQ=255) aTTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCaa < 5:282232/139‑1 (MQ=255) aataaACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCttt > 6:288553/1‑139 (MQ=255) ataaACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCtttt < 8:578/139‑1 (MQ=255) ctcgCCATCTCCACATTGTCGAAAGAGCAGAATATCACTGTAGGAAATCTGCTATTTCACTCTAAAACCCCCAACATCACCGGAAGGATCATAGA‑TTGTAATGGTCATACCACCTTTCACCCCTTTTCCAATGTAGcca < 6:100216/136‑1 (MQ=255) aTAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATATA‑TTGTAATGGTGTTACCACCTTTCAACCCTTTTCCAATGTAGaca < 3:208710/139‑1 (MQ=255) gCCATCTGCAATTTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGACGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCAAATGTAGACACGc < 6:93571/139‑1 (MQ=255) cccATCTGCACATTGTTGAAACAGCAGAATATCACTGTATCAAATCTGGTCTTTCACTCTAAAATCCCGAACATCACGGGATGGATCATAGA‑TTGTAATGGTTATACCACGTTTCAACCCTTTACCATTGTAGACACGc < 4:180069/138‑1 (MQ=255) cTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCtg > 1:301226/1‑139 (MQ=255) aTTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATc > 3:180069/1‑139 (MQ=255) aTTGTTGAAAGAGCACAATATCACTGTATGAAATCTGCTATTTCACTATAAAATCCAGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTTATACCACCTTTCAACCCTTTTCAAATGTAGACACGCCCCTGTGGATc < 7:288214/139‑1 (MQ=255) tgttgAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAg > 3:3057/1‑139 (MQ=255) ttgAGAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCa > 4:331774/1‑139 (MQ=255) aaaaAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATg > 5:333406/1‑138 (MQ=255) aaaGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTc > 3:375764/1‑97 (MQ=255) aaaGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTc < 4:375764/97‑1 (MQ=255) aaaGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATg > 2:256002/1‑138 (MQ=255) gCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTTGACACGCCCCTGTGGATCAGCATGGaaaa > 5:301407/1‑138 (MQ=255) aGAATTACACTGTATTAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGACGGATCATACA‑TGCTAATGGTTATCCCACCTTTCAACCCTTTTCCAATGACCACACGCCCCTGTGGATCAGCATGGAAAAAAc < 7:330299/139‑1 (MQ=255) cACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGCACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGCCACGCCCCTGTGGATCAGCAGGGAAAAAACACTCTTg > 4:226247/1‑139 (MQ=255) cACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGaaaaaa > 8:222089/1‑131 (MQ=255) cACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGaaaaaa < 7:222089/131‑1 (MQ=255) cTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTggg > 6:43519/1‑139 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATacc < 8:303809/71‑1 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATacc > 7:303809/1‑71 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCACCCCTTTTCCAATGTAGACCCGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGgtgt > 5:291124/1‑139 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGGCACGCCCCTGTGGATCAGCATGGAAAAAACAATCATGGgtgt > 1:357044/1‑139 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGgtgt > 7:311719/1‑139 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGgtgt > 8:217968/1‑139 (MQ=255) tATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAAAAATCTTGGttgt > 6:137194/1‑139 (MQ=255) tATGAAATATGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATacca > 5:24494/1‑72 (MQ=255) tATGAAATATGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATacca < 6:24494/72‑1 (MQ=255) tGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTtc > 7:154086/1‑139 (MQ=255) cTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac > 2:349773/1‑62 (MQ=255) cTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATac < 1:349773/62‑1 (MQ=255) cTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTtg > 1:379389/1‑139 (MQ=255) tGCTCTTTCACTATAAAATCCCGAACATCACCGGATGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTACCAATGTACACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTAGGTGTTCTCGTtga < 5:202519/139‑1 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTg < 8:54411/48‑1 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTg > 7:54411/1‑48 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCa < 6:242510/80‑1 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCa > 5:242510/1‑80 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTtgat > 3:71860/1‑139 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTtgat > 7:359212/1‑139 (MQ=255) gCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTtgat > 3:290623/1‑139 (MQ=255) ctAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCACCTGTGGATCAGCATGGAAAAAACAATCTTGTTTGTTCTCGTTGATGATTTTATTc > 2:92167/1‑138 (MQ=255) cGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGgtgt < 1:46690/109‑1 (MQ=255) cGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGgtgt > 2:46690/1‑109 (MQ=255) cGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCaattttaatt > 5:189243/1‑139 (MQ=255) gAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATTATTTTATTCAAGTTTAATTTTTTCATTGGt > 3:221804/1‑138 (MQ=255) gAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGtt < 8:154086/139‑1 (MQ=255) actgATCATAGATTTGAATTGGTGATCCCACCTTACAACCGTTTACCAATGTCCCCACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGtt < 4:30977/136‑1 (MQ=255) acggATCATAGATTTTTAATGGTTAAACCACATTAAACCCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGtt < 4:36464/137‑1 (MQ=255) cataaTAGA‑TTGTAATGGTGATACCACCTTAAAACCCTTTTCCAATGTACCCACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGTTATg < 5:32470/134‑1 (MQ=255) aTCATAGA‑TTGTAATGGTGATACCACCTTTCACCCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGTTATGCt > 1:42496/1‑139 (MQ=255) aTCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCtt < 1:191003/86‑1 (MQ=255) aTCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCtt > 2:191003/1‑86 (MQ=255) taaTAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACATGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGTGTGTTCTCGTTGATTATTTTTTTCAATTTTAATTTTTTCATTTGTTTTGGTc > 4:38608/3‑139 (MQ=255) tCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGTTATGCTc > 1:318300/1‑139 (MQ=255) | AAAACCTTTACCTTCGGCTCGTACGATTCGTAATAAACGAAGACATAGCCATCTGCACATTGTTGAAAGAGCAGAATATCACTGTATGAAATCTGCTCTTTCACTCTAAAATCCCGAACATCACCGGAAGGATCATAGA‑TTGTAATGGTGATACCACCTTTCAACCCTTTTCCAATGTAGACACGCCCCTGTGGATCAGCATGGAAAAAACAATCTTGGGTGTTCTCGTTGATGATTTTATTCAATTTTAATTTTTTCATTGGTTATGCTC > BS168_reference_genome/4021047‑4021317 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |