New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	3486759 =	0 (0.000)	19 (0.010) +ACTGCGTCAATACACGTTGACACTCTTTTGAAAGTGTGTTAAATTATCAG	16/134	NT	91.8%	intergenic (+1/+48)	araR/yvbT	transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase
	?	pSIJ663_pHT315_araE_xy	9781 =	6 (0.000)					intergenic (+5050/–)	ampR/–	–/–

CCGAAATCAGTGCTTGGAAAAGCAGCCGCCAAATATGTCATTGACTGCTTAGAGCATAAAAAGCCGAAGCAAGAGGATGTCATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC  >  BS168_reference_genome/3486624‑3486896                                                                                                                                        |                                                                                                                                          ccattgaatggcttcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaa                                                                                                                                         >  1:177981‑M1/136‑138 (MQ=255) ccattgaatggcgtcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaa                                                                                                                                         >  6:359202‑M1/136‑138 (MQ=255)   attgaatggcttcttgttacatgaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAg                                                                                                                                      >  5:243258‑M1/134‑139 (MQ=255)   attgaatggcttcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAg                                                                                                                                      >  2:321305‑M1/134‑139 (MQ=255)      gaatggcttcttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCa                                                                                                                                    >  1:235875‑M1/131‑138 (MQ=255)         tggcttcttgttacaggaacatttggttctaattgagttggagtattgttcattttcaaatacttcctttcatttcaatgataatttaaccccatttcaaaagagtgtcaacgtgtatttacgcagtAAAAAGCAATGt                                                                                                                                <  8:240246‑M1/12‑1 (MQ=255)               cttgttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATgg                                                                                                                            >  5:50420‑M1/122‑137 (MQ=255)                  gttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGtct                                                                                                                        >  5:68274‑M1/119‑138 (MQ=255)                  gttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGt                                                                                                                          >  7:351864‑M1/119‑136 (MQ=255)                  gttacaggaacatttggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGt                                                                                                                          >  1:171734‑M1/119‑136 (MQ=255)                   ttacaggaacattttgttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTcc                                                                                                                      >  1:189207‑M1/118‑139 (MQ=255)                                 ggttctaattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCt                                                                                                         >  1:285831‑M1/104‑138 (MQ=255)                                      taattgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacacattcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCtttttt                                                                                                    <  3:182978‑M1/40‑1 (MQ=255)                                        attgagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTta                                                                                                  >  2:62346‑M1/97‑138 (MQ=255)                                           gagttggagtattcttcattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAg                                                                                               >  4:396167‑M1/94‑138 (MQ=255)                                             gttggagtattcttcattttcaaatacttccgttgatgtcactgataatttaacacactttcaaaagtgtgtgaacgtgtttttacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTataggtg                                                                                            <  6:385034‑M1/48‑4 (MQ=255)                                                           cattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTc                                                                               <  4:200402‑M1/61‑1 (MQ=255)                                                           cattttcaaatacttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTc                                                                               <  7:61042‑M1/61‑1 (MQ=255)                                                                       cttcctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCg                                                                   >  3:200402‑M1/66‑138 (MQ=255)                                                                          cctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGt                                                                                                                                >  6:38533‑M1/63‑74 (MQ=255)                                                                          cctttcatgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGt                                                                                                                                <  5:38533‑M1/12‑1 (MQ=255)                                                                                 tgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCaaa                                                        >  8:321727‑M1/56‑139 (MQ=255)                                                                                 tgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGGCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATATCaaa                                                        >  7:262893‑M1/56‑139 (MQ=255)                                                                                     actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa                                                    >  3:115278‑M1/52‑139 (MQ=255)                                                                                     actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa                                                    <  5:151910‑M1/88‑1 (MQ=255)                                                                                      ctgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaactaac                                                   <  2:389047‑M1/89‑1 (MQ=255)                                                                                                 acacactttcaaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATtctgtct                                        <  6:411740‑M1/100‑1 (MQ=255)                                                                                                       tttcaaaagagagtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTCCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt                                  <  4:38235‑M1/106‑1 (MQ=255)                                                                                                           aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGc                                      >  2:251554‑M1/30‑131 (MQ=255)                                                                                                           aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGc                                      <  1:251554‑M1/102‑1 (MQ=255)                                                                                                           aaaagagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCaa                              >  5:411740‑M1/30‑139 (MQ=255)                                                                                                               gagtgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGt                          <  5:21672‑M1/114‑1 (MQ=255)                                                                                                                  tgtcaacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt                        >  8:61042‑M1/23‑138 (MQ=255)                                                                                                                      aacgtgtattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAg                   >  3:119910‑M1/19‑139 (MQ=255)                                                                                                                            tattgacgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAc              <  7:29578‑M1/126‑1 (MQ=255)                                                                                                                            tattgacgcagtAAAAAGCAATGTATGGGTCTCCACGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAcc             >  3:262769‑M1/13‑139 (MQ=255)                                                                                                                                 acgcagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAACCGTCCGCGATGATTTCAAACGAAGGCATTCTGTCTGCGTGTTCTAAGGTTTCTGAGTTACCCATAAt        <  7:102314‑M1/132‑1 (MQ=255)                                                                                                                                    cagtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTc     <  6:276546‑M1/135‑1 (MQ=255)                                                                                                                                    cagtAAAAAGCAATGTATGGGTATCCCCGCTACATTGCTATTTTTATAGATGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGGTCAAAGGTTTCTTAGTTAACCATAATTTc     <  6:6803‑M1/135‑1 (MQ=255)                                                                                                                                      gtAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt   >  1:29821‑M1/3‑139 (MQ=255)                                                                                                                                       tAATAAGCAATGTATGGGTCTCCCCGATACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCATACGTCAGCGATGATTTCAAACTAACTCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc  >  5:6803‑M1/2‑139 (MQ=255)                                                                                                                                       tAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc  >  5:276546‑M1/2‑139 (MQ=255)                                                                                                                                        |                                                                                                                                          CCGAAATCAGTGCTTGGAAAAGCAGCCGCCAAATATGTCATTGACTGCTTAGAGCATAAAAAGCCGAAGCAAGAGGATGTCATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC  >  BS168_reference_genome/3486624‑3486896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.